View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_41 (Length: 242)
Name: NF10197_low_41
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 17258711 - 17258507
Alignment:
| Q |
15 |
atgaattatatattttggtccctcctaataataagactgtgtcatgatttagaaattaattgnnnnnnnnnnnnnngatttggcagatggcaaaactaat |
114 |
Q |
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| T |
17258711 |
atgaattgtatattttgctgcctcctaataataagactgtgtcatgatttaggaattaattgtttttttg------gatttggcagatggcaaaacaaat |
17258618 |
T |
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| Q |
115 |
aatctacctatcaaaaccgaagaattgaaccaatactcgacacnnnnnnncgaacatgacctctaccctggaaagaaaatgatcttaggtaacaataatt |
214 |
Q |
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| T |
17258617 |
aatctacctatcaaaaccgaagaattgaaccaatactcgacactttttttcgaacatgacctctaccctggaaagaaaatgatcttaggtaacaataatt |
17258518 |
T |
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| Q |
215 |
ctcttagaaat |
225 |
Q |
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| T |
17258517 |
ctcttagaaat |
17258507 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 17986973 - 17986937
Alignment:
| Q |
167 |
aacatgacctctaccctggaaagaaaatgatcttagg |
203 |
Q |
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| T |
17986973 |
aacatgacctctaccctggaaagaaaatgagcttagg |
17986937 |
T |
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