View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10197_low_43 (Length: 241)

Name: NF10197_low_43
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10197_low_43
NF10197_low_43
[»] chr7 (3 HSPs)
chr7 (1-226)||(48106202-48106432)
chr7 (1-42)||(19195454-19195495)
chr7 (74-126)||(43077968-43078020)
[»] chr5 (4 HSPs)
chr5 (64-107)||(5003581-5003624)
chr5 (69-126)||(11167964-11168019)
chr5 (13-42)||(121383-121412)
chr5 (61-126)||(18160069-18160133)
[»] chr4 (1 HSPs)
chr4 (56-107)||(4460245-4460296)
[»] chr6 (1 HSPs)
chr6 (12-42)||(28070565-28070595)
[»] chr1 (1 HSPs)
chr1 (57-107)||(35820037-35820086)
[»] scaffold0400 (1 HSPs)
scaffold0400 (70-115)||(8629-8674)
[»] scaffold0365 (1 HSPs)
scaffold0365 (70-115)||(9272-9317)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 48106202 - 48106432
Alignment:
Q  1 tctaagtatttaaatgttgcaattttgaccccctaataaaaataactatctttgatcccc-tatgtttagccccttttgcagttttggcatcccggacca 99  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||    
T  48106202 tctaagtatttaaatgttgcgattttgaccccctaataaaaataactatctttgatccccctatgtttagccccttttgcaattttggcaccccggacca 48106301  T
Q  100 attttgacccaatcaacgcacacgtggtcactacc----nnnnnnnnntgtgacattaagaaatttacttggatatgtttgtggggtaatttttatgcac 195  Q
    ||||||||||| ||||||||||||||| |||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48106302 attttgacccagtcaacgcacacgtggccactaccaaaaaaaaataaatgtgacattaagaaatttacttggatatgtttgtggggtaatttttatgcac 48106401  T
Q  196 gtagaaattaaactaaagtatgtttttagtg 226  Q
    |||||||||||||||||||||||||||||||    
T  48106402 gtagaaattaaactaaagtatgtttttagtg 48106432  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19195495 - 19195454
Alignment:
Q  1 tctaagtatttaaatgttgcaattttgaccccctaataaaaa 42  Q
    ||||||| || |||||||||||||||||||||||| ||||||    
T  19195495 tctaagttttaaaatgttgcaattttgaccccctattaaaaa 19195454  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 43078020 - 43077968
Alignment:
Q  74 ttttgcagttttggcatcccggaccaattttgacccaatcaacgcacacgtgg 126  Q
    |||||||||||||||  ||| |||||||||||||| | |||| ||||||||||    
T  43078020 ttttgcagttttggccccccagaccaattttgaccaagtcaatgcacacgtgg 43077968  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 5003581 - 5003624
Alignment:
Q  64 gtttagccccttttgcagttttggcatcccggaccaattttgac 107  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  5003581 gtttatccccttttgcacttttggcctcccggaccaattttgac 5003624  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 11167964 - 11168019
Alignment:
Q  69 gccccttttgcagttttggcatcccggaccaattttgacccaatcaacgcacacgtgg 126  Q
    |||||||||||| |||||||  ||| |||||||||||||| | |||||||||||||||    
T  11167964 gccccttttgcaattttggc--cccagaccaattttgaccgagtcaacgcacacgtgg 11168019  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 121383 - 121412
Alignment:
Q  13 aatgttgcaattttgaccccctaataaaaa 42  Q
    ||||||||||||||||||||||||||||||    
T  121383 aatgttgcaattttgaccccctaataaaaa 121412  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 18160133 - 18160069
Alignment:
Q  61 tatgtttagccccttttgcagttttggcatcccggaccaattttgacccaatcaacgcacacgtgg 126  Q
    |||||||||||| |||||||||||||    |||||| |||||||||| || |||||||||||||||    
T  18160133 tatgtttagccc-ttttgcagttttgatcccccggatcaattttgactcagtcaacgcacacgtgg 18160069  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 4460245 - 4460296
Alignment:
Q  56 tcccctatgtttagccccttttgcagttttggcatcccggaccaattttgac 107  Q
    ||||||| ||||| ||||||||||| ||||||| |||| |||||||||||||    
T  4460245 tcccctaagtttacccccttttgcacttttggcctcccagaccaattttgac 4460296  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 28070565 - 28070595
Alignment:
Q  12 aaatgttgcaattttgaccccctaataaaaa 42  Q
    |||||||||||||||||||||||||||||||    
T  28070565 aaatgttgcaattttgaccccctaataaaaa 28070595  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 35820086 - 35820037
Alignment:
Q  57 cccctatgtttagccccttttgcagttttggcatcccggaccaattttgac 107  Q
    |||||| ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  35820086 cccctaagttta-ccccttttgcacttttggcctcccggaccaattttgac 35820037  T

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Target: scaffold0400 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 8629 - 8674
Alignment:
Q  70 ccccttttgcagttttggcatcccggaccaattttgacccaatcaa 115  Q
    ||||||||||||||||||  |||| |||||||||||||| ||||||    
T  8629 ccccttttgcagttttggtctcccagaccaattttgaccaaatcaa 8674  T

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Target: scaffold0365 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 9272 - 9317
Alignment:
Q  70 ccccttttgcagttttggcatcccggaccaattttgacccaatcaa 115  Q
    ||||||||||||||||||  |||| |||||||||||||| ||||||    
T  9272 ccccttttgcagttttggtctcccagaccaattttgaccaaatcaa 9317  T

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