View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_44 (Length: 241)
Name: NF10197_low_44
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_44 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 11191675 - 11191897
Alignment:
| Q |
19 |
ggtcatctagtaccaggattgtaaatctaaatttcatgcttagccaaacacatatcaaatctagtctaagtgtttaatggtgttacaaggacaagcgtca |
118 |
Q |
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| T |
11191675 |
ggtcatctagtaccacgattgtaaatctaaatttcatgcttagccaaacacatatcaaatctagtctaagtgtttaatggtgttacaaggacaagcgtca |
11191774 |
T |
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| Q |
119 |
catgaaagacaaacaaaagctctcgcaagttgaattattggtcgttgatgaagctgctgctatttcttgtcttctactattaatggttatgaaggtattg |
218 |
Q |
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| T |
11191775 |
catgaaagacaaacaaaagctctcgcaagttgaattattggtcgttgatgaagctgctgctatttcttgtcttctactattaatggttatgaaggtattg |
11191874 |
T |
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| Q |
219 |
gacgctctttatcattaaaactt |
241 |
Q |
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| T |
11191875 |
gacgctctttatcattaaaactt |
11191897 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 38432145 - 38432096
Alignment:
| Q |
133 |
aaaagctctcgcaagttgaattattggtcgttgatgaagctgctgctatt |
182 |
Q |
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| T |
38432145 |
aaaagctttcgcaagttgaattattggttgttgatgaagcagctgctatt |
38432096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 10311534 - 10311454
Alignment:
| Q |
35 |
gattgtaaatctaaatttcatgcttagccaaacacatatcaaatctagtctaagtgtttaatggtgttacaaggacaagcg |
115 |
Q |
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| T |
10311534 |
gattgtaaatcttcattacatgcttagccaggcacagatcaaatccagcccaactgttttatggtgttacaaggacaagcg |
10311454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 10308909 - 10308872
Alignment:
| Q |
204 |
gttatgaaggtattggacgctctttatcattaaaactt |
241 |
Q |
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| T |
10308909 |
gttatgaaggtactggacgctctttatcattaaaactt |
10308872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 10309135 - 10309086
Alignment:
| Q |
133 |
aaaagctctcgcaagttgaattattggtcgttgatgaagctgctgctatt |
182 |
Q |
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| T |
10309135 |
aaaagctctcacaagttgaactgttggtagttgatgaagctgccgctatt |
10309086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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