View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_48 (Length: 230)
Name: NF10197_low_48
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_48 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33950540 - 33950769
Alignment:
| Q |
1 |
caaaaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatct |
100 |
Q |
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| T |
33950540 |
caaaaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttaatgatgtcttgaacaaaatatct |
33950639 |
T |
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| Q |
101 |
caaattcttcaaaaagcacaaaagaaccaaagttcaaggcgttccttgaggttaatcttaaaggatttatctccctttgtccaagatataaagcaataca |
200 |
Q |
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| T |
33950640 |
caaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaataca |
33950739 |
T |
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| Q |
201 |
atgatcatttggatcaccccagcgaagaaa |
230 |
Q |
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| T |
33950740 |
atgatcatttggatcaccccagagaagaaa |
33950769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 33959247 - 33959349
Alignment:
| Q |
22 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagcacaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
33959247 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaatacttcaaaaagcacga |
33959346 |
T |
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| Q |
122 |
aag |
124 |
Q |
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||| |
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| T |
33959347 |
aag |
33959349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 33973227 - 33973433
Alignment:
| Q |
21 |
tcaaattcatgagtagcgctac---acacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagc |
117 |
Q |
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||||||||||||||||||| || ||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||| || ||| ||| |
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| T |
33973227 |
tcaaattcatgagtagcgccacgacacatattattacccttacaacaagatttaa------tgatgtcttgaacaaaatatctgaaatagttgaaacagc |
33973320 |
T |
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| Q |
118 |
acaaaagaaccaaagttcaaggcgttccttgaggttaatcttaaaggatttatctccctttgtccaagatataaagcaatacaatgatcatttggatcac |
217 |
Q |
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|| |||||||||||||||||||| | || ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| || |||||||| |
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| T |
33973321 |
acgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaatgaacacttggatcaa |
33973420 |
T |
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| Q |
218 |
cccagcgaagaaa |
230 |
Q |
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| T |
33973421 |
cccagagaagaaa |
33973433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33990019 - 33990245
Alignment:
| Q |
1 |
caaaaacagaagaaggaatctcaaattcatgagtagcgc---tacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaata |
97 |
Q |
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||||| |||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33990019 |
caaaagcagaggaaggaatctcaaattcatgagtagcgccactacacatattattacccttacaacaagattt------catgatgtcttgaacaaaata |
33990112 |
T |
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| Q |
98 |
tctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgttccttgaggttaatcttaaaggatttatctccctttgtccaagatataaagcaat |
197 |
Q |
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|||||||| || ||| ||||| |||| |||||||| |||||| | ||||||| |||||| ||||||||| ||| | || ||||| |||||||||| |
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| T |
33990113 |
tctcaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaat |
33990212 |
T |
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| Q |
198 |
acaatgatcatttggatcaccccagcgaagaaa |
230 |
Q |
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||||||| ||||||||||| ||||| ||||||| |
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| T |
33990213 |
acaatgaacatttggatcatcccagagaagaaa |
33990245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 33959346 - 33959408
Alignment:
| Q |
160 |
aaaggatttatctccctttgtccaagatataaagcaatacaatgatcatttggatcaccccag |
222 |
Q |
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| T |
33959346 |
aaaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccag |
33959408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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