View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_49 (Length: 227)
Name: NF10197_low_49
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 22906326 - 22906110
Alignment:
| Q |
1 |
tttgagtttataccatttggtgctgggagaaggatatgtcctggaataatatttggtattgctaacatagaaatctcgcttgcaaatttgcttttccatt |
100 |
Q |
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| T |
22906326 |
tttgagtttataccatttggtgctgggagaaggatatgtcctggaataatatttggtattgctaacatagaaatctcgcttgcgaatttgcttttccatt |
22906227 |
T |
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| Q |
101 |
ttgattggaagatgcctaatgggaacaatgctgatgaacttgacatgattgaatcttttggtttggctgttagaagaaaac-tgatttgtggttggttcc |
199 |
Q |
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| T |
22906226 |
ttgattggaagatgcctaatgggaacaatgctgatgaacttgacatgattgaatcttttggtttggctgttagaagaaaacatgatttgtggttggttcc |
22906127 |
T |
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| Q |
200 |
tacccacttatcactctt |
217 |
Q |
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| T |
22906126 |
ta-ccacttatcactctt |
22906110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 22855325 - 22855128
Alignment:
| Q |
6 |
gtttataccatttggtgctgggagaaggatatgtcctggaataatatttggtattgctaacatagaaatctcgcttgcaaatttgcttttccattttgat |
105 |
Q |
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| T |
22855325 |
gtttataccatttggtgctgggagaaggatgtgtccgggcatcgcatttggtattgcgaacttggaaatctcgcttgcgaatttgcttttccattttgat |
22855226 |
T |
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| Q |
106 |
tggaagatgcctaatgggaacaatgctgatgaacttgacatgattgaatcttttggtttggctgttagaagaaaac-tgatttgtggttggttcctac |
202 |
Q |
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| T |
22855225 |
tggaagatgcctaatggttgtaaggctgatgaacttgacatggatgaatcatttgggttggctgttagaagaaaacatgatttatggttggttcctac |
22855128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 22904222 - 22904420
Alignment:
| Q |
5 |
agtttataccatttggtgctgggagaaggatatgtcctggaataatatttggtattgctaacatagaaatctcgcttgcaaatttgcttttccattttga |
104 |
Q |
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||||||||||||||||||||||||||||||| |||||||| || | || |||||||| | | | |||||||| |||||||||||||||||||||||||| |
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| T |
22904222 |
agtttataccatttggtgctgggagaaggatgtgtcctggcatgacatccggtattgcaagcttggaaatctcacttgcaaatttgcttttccattttga |
22904321 |
T |
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| Q |
105 |
ttggaagatgcctaatgggaacaatgctgatgaacttgacatgattgaatcttttggtttggctgttagaagaaaac-tgatttgtggttggttcctac |
202 |
Q |
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| T |
22904322 |
ttggaggatgcctaatgggaacaacgctgatgacctagacatggatgaatcctttggattggctgttagaagaaaacatgatttacggttggttcctac |
22904420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 22919098 - 22918903
Alignment:
| Q |
5 |
agtttataccatttggtgctgggagaaggatatgtcctggaataatatttggtattgctaacatagaaatctcgcttgcaaatttgcttttccattttga |
104 |
Q |
| |
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||||||| ||||| |||||||||||||| || ||||||||||| | ||||| |||||||| | ||||||| || |||||||||||||||||||| || |
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| T |
22919098 |
agtttattccattcggtgctgggagaagaatgtgtcctggaattacgtttggcattgctaatgttgaaatcttactagcaaatttgcttttccatttcga |
22918999 |
T |
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| Q |
105 |
ttggaagatgcctaatgggaacaatgctgatgaacttgacatgattgaatcttttggtttggctgttagaagaaaac-tgatttgtggttggttcc |
199 |
Q |
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|||||| ||| | |||| || || ||||| ||||||||||||| |||||| ||||||||| | |||||||| |||| ||||||||| ||| |||| |
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| T |
22918998 |
ttggaaaatggttgatggaaataaggctgaagaacttgacatgactgaatcgtttggtttgtcggttagaaggaaacatgatttgtgcttgattcc |
22918903 |
T |
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