View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10197_low_5 (Length: 485)

Name: NF10197_low_5
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10197_low_5
NF10197_low_5
[»] chr3 (5 HSPs)
chr3 (14-471)||(39354716-39355170)
chr3 (347-469)||(32992859-32992980)
chr3 (28-201)||(46911478-46911650)
chr3 (14-201)||(32993142-32993328)
chr3 (347-469)||(46911194-46911315)
[»] chr2 (4 HSPs)
chr2 (11-292)||(42161165-42161446)
chr2 (12-208)||(16712210-16712405)
chr2 (387-430)||(42161543-42161586)
chr2 (349-421)||(27890162-27890234)
[»] chr8 (3 HSPs)
chr8 (25-200)||(40536476-40536650)
chr8 (12-208)||(20670189-20670384)
chr8 (347-469)||(40536814-40536936)
[»] chr7 (2 HSPs)
chr7 (109-200)||(45752864-45752955)
chr7 (347-469)||(45753119-45753240)
[»] chr4 (1 HSPs)
chr4 (109-200)||(15828618-15828708)
[»] chr6 (2 HSPs)
chr6 (349-421)||(26208200-26208272)
chr6 (239-280)||(26208357-26208398)
[»] chr1 (2 HSPs)
chr1 (11-67)||(41949597-41949653)
chr1 (21-70)||(43326565-43326615)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 471
Target Start/End: Original strand, 39354716 - 39355170
Alignment:
Q  14 agaagggaaggtttcattaatcttacaattgttagtgatcatatcaataagcaccttcaagtcattttaaacaagcaggtgagnnnnnnncccaactcca 113  Q
    |||||||| |||| ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||       ||||| ||||    
T  39354716 agaagggatggttccattaattttacaattgttagtaatcgtatcaataagcaccttcaagtcattttaaacaagcaggtgagaaaaaa-cccaattcca 39354814  T
Q  114 agccatatcaagccccaaataaagaccccacatctcaataaacaaagcatcacaagttccaattttgcgactaaaacccttaatccatcttccataagaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39354815 agccatatcaagccccaaataaagaccccacatctcaataagcaaagcatcacaagttccaattttgcgactaaaacccttaatccatcttccataagaa 39354914  T
Q  214 gatgaaaaagcccaccacattcagaaagctccctattacctttacatactacatcacaattgagtttaatccaaccattcatagcnnnnnnnaagccaat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||        |||||||    
T  39354915 gatgaaaaagcccaccacattcagaaagctccctattacctttacacactacatcataattgagtttaatccaaccattcatagctctttttcagccaat 39355014  T
Q  314 acacacaatttccttatgctaaggattgctttgacttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcatt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39355015 acacacaatttccttatgctaaggattgctttgacttcttcaatggccc--atggaattttgtattacataagttggaatatccgatctttggaatcatt 39355112  T
Q  414 cttcaaaattagctttggtttcttcaagtcctcagatgccagcatgaagtcatgaatg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39355113 cttcaaaattagctttggtttcttcaagtcctcagatgccagcatgaagtcatgaatg 39355170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 347 - 469
Target Start/End: Complemental strand, 32992980 - 32992859
Alignment:
Q  347 acttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaattagctttggtttcttcaagtcctc 446  Q
    ||||||||||||||| | ||| ||||||| || |||||||||||  |||| |||||||| |||| |||||||||| ||||||| |||||| ||||||| |    
T  32992980 acttcttcaatggccataatgaaattttggatgacataagttgggttatctggtctttgaaatccttcttcaaaaatagcttt-gtttctccaagtccac 32992882  T
Q  447 agatgccagcatgaagtcatgaa 469  Q
    | |||||| |||| |||||||||    
T  32992881 atatgccaacatgtagtcatgaa 32992859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 46911650 - 46911478
Alignment:
Q  28 cattaatcttacaattgttagtgatcatatcaataagcaccttcaagtcattttaaacaagcaggtgagnnnnnnncccaactccaagccatatcaagcc 127  Q
    |||||||||||||||||||||| | ||| ||||||||||||||  ||||| | | ||||| || |||||       | |  |||| ||||||||| || |    
T  46911650 cattaatcttacaattgttagtaaccatgtcaataagcacctttgagtcactctcaacaatcaagtgagatataccctct-ctcctagccatatccagtc 46911552  T
Q  128 ccaaataaagaccccacatctcaataaacaaagcatcacaagttccaattttgcgactaaaacccttaatccat 201  Q
    ||| |||||||||||||||||||  |  || ||||||||||| |||||||||||| ||||||||||| ||||||    
T  46911551 ccagataaagaccccacatctcagcatgcagagcatcacaagctccaattttgcggctaaaacccttgatccat 46911478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 32993328 - 32993142
Alignment:
Q  14 agaagggaaggtttcattaatcttacaattgttagtgatcatatcaataagcaccttcaagtcattttaaacaagcaggtgagnnnnnnncccaactcca 113  Q
    |||||| | |||| |||| ||||||||||||||||| | ||||||||||| ||||||  ||||| | | ||||| || |||||       | |  |||||    
T  32993328 agaaggaatggttccattgatcttacaattgttagtaaccatatcaataaacacctttgagtcactctcaacaatcaagtgagacataccctct-ctcca 32993230  T
Q  114 agccatatcaagccccaaataaagaccccacatctcaataaacaaagcatcacaagttccaattttgcgactaaaacccttaatccat 201  Q
    ||||||||| ||||||| |||||||||||||||||||  |  || ||||||||||  |||||||||| | ||||||||||| ||||||    
T  32993229 agccatatccagccccagataaagaccccacatctcagcatgcagagcatcacaaactccaattttgtggctaaaacccttgatccat 32993142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 469
Target Start/End: Complemental strand, 46911315 - 46911194
Alignment:
Q  347 acttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaattagctttggtttcttcaagtcctc 446  Q
    |||||||||| | |||| ||| ||||||| || |||||||||||| |||| | ||||||||||| |||||||||| ||||||| |||||| ||||| |      
T  46911315 acttcttcaacgaccctaatgaaattttggatgacataagttggattatctgatctttggaatccttcttcaaaaatagcttt-gtttctccaagtacat 46911217  T
Q  447 agatgccagcatgaagtcatgaa 469  Q
    |||| |||||||| |||||||||    
T  46911216 agatcccagcatgtagtcatgaa 46911194  T

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Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 42161165 - 42161446
Alignment:
Q  11 cagagaagggaaggtttcattaatcttacaattgttagtgatcatatcaataagcaccttcaagtcattttaaacaagcaggtgagnnnnnnncccaact 110  Q
    ||||||||||| |||| |||| ||||| ||||||||||| | ||||||||||||||| ||  ||||| | | ||||| || |||||       | || ||    
T  42161165 cagagaagggatggttccattgatcttgcaattgttagtaaccatatcaataagcacttttgagtcactctcaacaatcacgtgagataaaccctca-ct 42161263  T
Q  111 ccaagccatatcaagccccaaataaagaccccacatctcaataaacaaagcatcacaagttccaattttgcgactaaaacccttaatccatcttccataa 210  Q
    ||||||||||||||||||||||||||||||||||||||||  |  || |||||| |||| ||||||||||||| |||| ||||| ||||||||||||| |    
T  42161264 ccaagccatatcaagccccaaataaagaccccacatctcagcatgcagagcatcgcaagctccaattttgcgattaaatcccttgatccatcttccatca 42161363  T
Q  211 ga-agatgaaaaagcccaccacattcagaaagctccctattacctttacatactacatcacaattgagtttaatccaaccatt 292  Q
    ||  || | ||||  |  ||||| |||| ||||||||  |||||||| ||  || |||||||||||||||| | |||||||||    
T  42161364 gattgacgtaaaattctgccacactcagcaagctcccctttacctttgcacgctccatcacaattgagtttcacccaaccatt 42161446  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 16712210 - 16712405
Alignment:
Q  12 agagaagggaaggtttcattaatcttacaattgttagtgatcatatcaataagcaccttcaagtcattttaaacaagcaggtgagnnnnnnncccaactc 111  Q
    |||||||||| |||| ||||  |||||||||||||||| | ||||||||||||||| ||  ||||| |   ||||| || |||||       ||  ||||    
T  16712210 agagaagggatggttccattggtcttacaattgttagtaaccatatcaataagcacttttgagtcactcacaacaatcacgtgagataaac-ccttactc 16712308  T
Q  112 caagccatatcaagccccaaataaagaccccacatctcaataaacaaagcatcacaagttccaattttgcgactaaaacccttaatccatcttccat 208  Q
    |||||||||||| |||||| ||||||| ||||||||| |  |  || ||||| |||||||||||||||||||||||| | ||| |||||||||||||    
T  16712309 caagccatatcatgccccagataaagagcccacatcttagcatgcagagcattacaagttccaattttgcgactaaatctcttgatccatcttccat 16712405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 42161543 - 42161586
Alignment:
Q  387 ttggaatatccggtctttggaatcattcttcaaaattagctttg 430  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||    
T  42161543 ttggattatccggtctttggaatccttcttcaaaaatagctttg 42161586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 27890162 - 27890234
Alignment:
Q  349 ttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaa 421  Q
    ||||||||||  ||||||| ||||||  || ||||| |||||| ||  |||||||||||||| ||||||||||    
T  27890162 ttcttcaatgaacctgatgtaattttagataacataggttggattagtcggtctttggaatctttcttcaaaa 27890234  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 40536476 - 40536650
Alignment:
Q  25 tttcattaatcttacaattgttagtgatcatatcaataagcaccttcaagtcattttaaacaagcaggtgagnnnnnnncccaactccaagccatatcaa 124  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||  ||||| | | ||||| || |||||       | |  |||||||||||||| |    
T  40536476 tttcattgatcttacgattgttagtgaccatatcaataagcacctttgagtcactctcaacaatcaagtgagatataccctct-ctccaagccatatcta 40536574  T
Q  125 gccccaaataaagaccccacatctcaataaacaaagcatcacaagttccaattttgcgactaaaacccttaatcca 200  Q
    | ||||||||||||||||||||||||  |  || ||||||||||| |||||||||||| | ||||||||| |||||    
T  40536575 gtcccaaataaagaccccacatctcagcatgcagagcatcacaagctccaattttgcggcaaaaacccttgatcca 40536650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 20670189 - 20670384
Alignment:
Q  12 agagaagggaaggtttcattaatcttacaattgttagtgatcatatcaataagcaccttcaagtcattttaaacaagcaggtgagnnnnnnncccaactc 111  Q
    |||||||||| |||| |||| ||||| ||||||||||| | |||||||||||| || ||  ||||| | | ||||| || |||||       | || |||    
T  20670189 agagaagggatggttccattgatcttgcaattgttagtaaccatatcaataagaacttttgagtcactctcaacaatcacgtgagataaaccctca-ctc 20670287  T
Q  112 caagccatatcaagccccaaataaagaccccacatctcaataaacaaagcatcacaagttccaattttgcgactaaaacccttaatccatcttccat 208  Q
    ||||||||||||| |||||||||||||||||||||||||  |   | |||||||||| |||||||||| |||||||| |  || |||||||||||||    
T  20670288 caagccatatcaaaccccaaataaagaccccacatctcagcatgtagagcatcacaaattccaattttacgactaaatcttttgatccatcttccat 20670384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 469
Target Start/End: Original strand, 40536814 - 40536936
Alignment:
Q  347 acttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaattagctttggtttcttcaagtcctc 446  Q
    ||||||||||||||||| ||| ||||||| || |||||||||||  |||| |||||||| |||| | ||||||||     ||| |||||| ||||||| |    
T  40536814 acttcttcaatggccctaatgaaattttggatgacataagttgggttatctggtctttgaaatcctacttcaaaaaacagttttgtttctccaagtccac 40536913  T
Q  447 agatgccagcatgaagtcatgaa 469  Q
    ||||||||||||| |||||||||    
T  40536914 agatgccagcatgtagtcatgaa 40536936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 45752864 - 45752955
Alignment:
Q  109 ctccaagccatatcaagccccaaataaagaccccacatctcaataaacaaagcatcacaagttccaattttgcgactaaaacccttaatcca 200  Q
    |||||||||||||| ||||| | |||||||||||||||||||  |  || ||||||||||| ||||||||| |||||||||||||| |||||    
T  45752864 ctccaagccatatccagccctagataaagaccccacatctcagcatgcagagcatcacaagctccaattttacgactaaaacccttgatcca 45752955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 469
Target Start/End: Original strand, 45753119 - 45753240
Alignment:
Q  347 acttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaattagctttggtttcttcaagtcctc 446  Q
    ||||||||||||||||| ||| ||||||| || |||||||||||  |||  ||| |||| |||| |||||||||| ||| ||| |||||| |||||||      
T  45753119 acttcttcaatggccctaatgaaattttggatgacataagttgggttatttggtatttgaaatccttcttcaaaaatag-ttttgtttctccaagtccaa 45753217  T
Q  447 agatgccagcatgaagtcatgaa 469  Q
    ||||| ||||||| | |||||||    
T  45753218 agatgtcagcatgtaatcatgaa 45753240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 15828618 - 15828708
Alignment:
Q  109 ctccaagccatatcaagccccaaataaagaccccacatctcaataaacaaagcatcacaagttccaattttgcgactaaaacccttaatcca 200  Q
    |||||||||||||| ||||||| ||||||| |||||||||||  | ||| ||||| ||||| || ||||||| | ||||||||||| |||||    
T  15828618 ctccaagccatatctagccccagataaaga-cccacatctcatcatacagagcatgacaagctctaattttgtggctaaaacccttgatcca 15828708  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 26208272 - 26208200
Alignment:
Q  349 ttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaa 421  Q
    ||||||||||  ||||||| ||||||| || ||||||| |||| || |||||||||||| || ||||||||||    
T  26208272 ttcttcaatgaacctgatgtaattttggataacataaggtggattagccggtctttggattccttcttcaaaa 26208200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 26208398 - 26208357
Alignment:
Q  239 aagctccctattacctttacatactacatcacaattgagttt 280  Q
    |||||||| ||||||||||||| || ||||||||||||||||    
T  26208398 aagctccccattacctttacatgctccatcacaattgagttt 26208357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 41949653 - 41949597
Alignment:
Q  11 cagagaagggaaggtttcattaatcttacaattgttagtgatcatatcaataagcac 67  Q
    ||||||| ||| |||| |||| ||||| ||||||||||| |||||||||||||||||    
T  41949653 cagagaatggatggttccattgatcttgcaattgttagtaatcatatcaataagcac 41949597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 43326565 - 43326615
Alignment:
Q  21 aaggtttcattaatcttacaattgttagtga-tcatatcaataagcacctt 70  Q
    ||||||||||||||||||||||||||||| |  ||||| ||||||||||||    
T  43326565 aaggtttcattaatcttacaattgttagtaacccatattaataagcacctt 43326615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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