View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_50 (Length: 212)
Name: NF10197_low_50
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 32147454 - 32147634
Alignment:
| Q |
16 |
agagcaaggagctaaatcccaatttggaagcagccaaatcaaattgcaaaagattattctccaactgataccctccaatcacaattgaagcccatgtatt |
115 |
Q |
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| T |
32147454 |
agagcaaggagctaaatcccaatttagaagcagccaaatcaaattgcaaaagattattctccaactgataccctccaatcacaattgaagcccatgtatt |
32147553 |
T |
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| Q |
116 |
ctcaccaccaatcacaaaaccaagacacaaaacctcatcatttatattcaccattgaatttgcaccaaatatcctccaaat |
196 |
Q |
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| T |
32147554 |
ctcaccaccaatcacaaaaccaagacacaaaacctcatcatttatattcaccattgaatttgcaccaaatatcctccaaat |
32147634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 32138061 - 32138240
Alignment:
| Q |
16 |
agagcaaggagctaaatcccaatttggaagcagccaaatcaaattgcaaaagattattctccaactgataccctccaatcacaattgaagcccatgtatt |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
32138061 |
agagcaaggagctaaatcccaatttagaagcagccaaatcaaattgcaaaagattattctccaactgataccctccaatcacaattgaagtccttgtatt |
32138160 |
T |
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| Q |
116 |
ctcaccaccaatcacaaaaccaagacacaaaacctcatcatttatattcaccattgaatttgcaccaaatatcctccaaa |
195 |
Q |
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| T |
32138161 |
cttaccaccattcacaaatccaagacacaaaacttcatcatttatactcaccattgaatttgcaccaaatatcctccaaa |
32138240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 32126267 - 32126437
Alignment:
| Q |
26 |
gctaaatcccaatttggaagcagccaaatcaaattgcaaaagattattctccaactgataccctccaatcacaattgaagcccatgtattctcaccacca |
125 |
Q |
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|||||| |||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||| ||||||| |
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| T |
32126267 |
gctaaaacccaatctagacgcagccaaatcaaattgcaaaagattattctccaactgataccctccaatcacaatagaagtccttaggttcacaccaccg |
32126366 |
T |
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| Q |
126 |
atcacaaaaccaagacacaaaacctcatcatttatattcaccattgaatttgcaccaaatatcctccaaat |
196 |
Q |
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| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |
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| T |
32126367 |
ttaacaaatccaagacacaaaacctcatcatttatattcaccatcgaatttgcaccaaacatgctccaaat |
32126437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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