View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10197_low_9 (Length: 462)
Name: NF10197_low_9
Description: NF10197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10197_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Complemental strand, 15688724 - 15688283
Alignment:
| Q |
17 |
acatcaaaataacaggatagaagtaagtaaagcacataaataaaccactacacaccagaatccatacatttacgactcaatcttatcatgaatcttcatt |
116 |
Q |
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| T |
15688724 |
acatcaaaataacaggatagaagtaagtaaagcacataaataaaccactacacaccagaatccatacatttacgactcaatcttatcatgaatcttcact |
15688625 |
T |
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| Q |
117 |
aaagtatctttcatatcatttatagtgatttaatgcatattaagctaaattttaacaacgaaactagtcaacaatgatgccaaaaatgctcctactatcg |
216 |
Q |
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| T |
15688624 |
aaagtatctttcatatcatttatagtgatttaatgcatattaagctaaattttaacaacgaaactagtcaacaatgatgccaaaaatgctcctgctatcg |
15688525 |
T |
|
| Q |
217 |
acgtgcaagggtcatcttacttttcttgcaggctaaatctcattagccgctcagagtccaatatttgggctacaataacccacttcagtgtcatttagcc |
316 |
Q |
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| T |
15688524 |
atgtgcaagggtcatcttacttttcttacaggctaaatctcattagccgctcatagtccaatgtttgggctacaataacccacttcagtgtcatttagcc |
15688425 |
T |
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| Q |
317 |
atgctcacagtaataataatgatacttttcatctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataaacatagacata |
416 |
Q |
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| T |
15688424 |
atgctcacagtaataataatgatacttttcatctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataaacatagacata |
15688325 |
T |
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| Q |
417 |
agttgcaagttcaatcaatagccttctcattacctttgctac |
458 |
Q |
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| T |
15688324 |
agttgcaagttcaatcaatagctttctcattacctttgctac |
15688283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 38 - 406
Target Start/End: Complemental strand, 15696729 - 15696374
Alignment:
| Q |
38 |
agtaagtaaagcacataaataaaccactacacaccagaatccatacatttacgactcaatcttatcatgaatcttcattaaagtatctttcatatcattt |
137 |
Q |
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| T |
15696729 |
agtaagtaaaacacataaataaaccactacacactacaatccacacatcaacgactcaatctt------------cattaaagtatctttaagatcattc |
15696642 |
T |
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| Q |
138 |
atagtgatttaatgcatattaagctaaattttaacaacgaaactagtcaacaatgatgccaaaaatgctcctactatc-gacgtgcaagggtcatcttac |
236 |
Q |
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| T |
15696641 |
ctaacgatgtaattaatgttaaactaaattttgataaggaaactagctat---tgatgccaaaaatgctcttgctacccggcatacaagggtcatcttac |
15696545 |
T |
|
| Q |
237 |
ttttcttgcaggctaaatctcattagccgctcagagtccaatatttgggctacaataacccacttcagt--gtcatttagccatgctcacagtaataata |
334 |
Q |
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| T |
15696544 |
tttctgtggagtctaaatctcattagtcggttagagtccaatatttgggctagaataacccactttagtcggtcagagtccaatattta-ggcaataata |
15696446 |
T |
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| Q |
335 |
atgatacttttcatctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataaa |
406 |
Q |
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| T |
15696445 |
atgataattttcttataaaagatgggaccaaccatcaaccttgtgcatccatacataagataatggcataaa |
15696374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 24759630 - 24759687
Alignment:
| Q |
348 |
tctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataa |
405 |
Q |
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| T |
24759630 |
tctaaaagatgggaccaataatcaaccttgtgcatccatacacaagatagttgcataa |
24759687 |
T |
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