View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10198_high_11 (Length: 242)
Name: NF10198_high_11
Description: NF10198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10198_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 45283238 - 45283022
Alignment:
| Q |
16 |
aaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacagaaggttaccgctgttgcccttgacattgtgactggtttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283238 |
aaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttg |
45283139 |
T |
|
| Q |
116 |
tccgacatcctccagcaattcaacttgacgtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggataccctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283138 |
tccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggataccctt |
45283039 |
T |
|
| Q |
216 |
catggatctctgcttct |
232 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
45283038 |
catggatctcttcttct |
45283022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 45294627 - 45294410
Alignment:
| Q |
15 |
aaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacagaaggttaccgctgttgcccttgacattgtgactggttt |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294627 |
aaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggttt |
45294528 |
T |
|
| Q |
115 |
gtccgacatcctccagcaattcaacttgacgtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggataccct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45294527 |
gtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggataccct |
45294428 |
T |
|
| Q |
215 |
tcatggatctctgcttct |
232 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45294427 |
tcatggatctctgcttct |
45294410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 45303587 - 45303370
Alignment:
| Q |
15 |
aaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacagaaggttaccgctgttgcccttgacattgtgactggttt |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303587 |
aaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggttt |
45303488 |
T |
|
| Q |
115 |
gtccgacatcctccagcaattcaacttgacgtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggataccct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45303487 |
gtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggataccct |
45303388 |
T |
|
| Q |
215 |
tcatggatctctgcttct |
232 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45303387 |
tcatggatctctgcttct |
45303370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 45274997 - 45274781
Alignment:
| Q |
16 |
aaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacagaaggttaccgctgttgcccttgacattgtgactggtttg |
115 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
45274997 |
aaatgatggtgagaagaaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaagatcaccgcggttgcccttgacattgtgactggtttg |
45274898 |
T |
|
| Q |
116 |
tccgacatcctccagcaattcaacttgacgtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggataccctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274897 |
tccgacatcctccagcaattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggataccctt |
45274798 |
T |
|
| Q |
216 |
catggatctctgcttct |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
45274797 |
catggatctctgcttct |
45274781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 45271464 - 45271248
Alignment:
| Q |
16 |
aaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacagaaggttaccgctgttgcccttgacattgtgactggtttg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
45271464 |
aaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcacagccgttgcccttgacattgtgactggtttg |
45271365 |
T |
|
| Q |
116 |
tccgacatcctccagcaattcaacttgacgtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggataccctt |
215 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271364 |
tctgacatcctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggataccctt |
45271265 |
T |
|
| Q |
216 |
catggatctctgcttct |
232 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
45271264 |
catggatctcttcttct |
45271248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University