View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10198_high_13 (Length: 238)
Name: NF10198_high_13
Description: NF10198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10198_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3606059 - 3606281
Alignment:
| Q |
1 |
ttaattttctatttaaatctcagaagaaatttgtttttaagtacacatcgatccattgcatgcatggcacaaacagcttatggtcttgaatgctcatgtt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3606059 |
ttaattttctctttaaatctcagaagaaatttgtttttaagtacacatcgatccattgcatgcatggcacaaacagcttatggatttgaatgctcatgtt |
3606158 |
T |
|
| Q |
101 |
cttaaagtcaaaaacttaaattaaaacctatttcaagatgggaaatacctaagtgcacgacaattttttacatgagatgtagtaattttttacatgtcag |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3606159 |
cttaaagtcaaagacttaaattaaaacctatttcaagatgggaaatacctaagtgcacgacaattttttacatgagatgcagtaattttttacatgtcag |
3606258 |
T |
|
| Q |
201 |
cttcaagatgatgaactagaatc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3606259 |
cttcaagatgatgaactagaatc |
3606281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University