View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10198_high_3 (Length: 375)
Name: NF10198_high_3
Description: NF10198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10198_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 38822857 - 38823030
Alignment:
| Q |
15 |
ggagcagagacctttaagcctggactttaattggggtagtaaatcccttagcatagaacttcttaaacttgctactgttaatgtttactcttactacaag |
114 |
Q |
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| T |
38822857 |
ggagcacagacctctgagcctggactttaattggggtagtaaatcccttagcatataacttcttaaacttgctactgttaatgtttactcttactacaag |
38822956 |
T |
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| Q |
115 |
attgggagtacattgctttgaaggtatgcattaatcccacctcaactgccattcgaaaagaaaatcaaacctga |
188 |
Q |
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| T |
38822957 |
attgggagtacattgcttggaaggtatgcattaatcccaccacaaccgccattcgaaaagaaaatcaaacctga |
38823030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 194 - 325
Target Start/End: Original strand, 38823074 - 38823203
Alignment:
| Q |
194 |
ttatattataatgagctaaggaagacttgccttaatgtgcctaagtttattaaatttttctaaaatagatattttaatgttattattgtgcttttgtcgc |
293 |
Q |
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| T |
38823074 |
ttatattataatgagctaaggaagacttgctttaatgtgcctaagtttattaaatttttctaaaatagatattttaatgttattattgtaattttgtcgc |
38823173 |
T |
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| Q |
294 |
ttgagtttttactcgttattagacttgaatat |
325 |
Q |
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| T |
38823174 |
ttgag--tttactcgttattagacttgaatat |
38823203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 38831402 - 38831456
Alignment:
| Q |
78 |
taaacttgctactgttaatgtttactcttactacaagattgggagtacattgctt |
132 |
Q |
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| T |
38831402 |
taaacttgctactattaatgtttactcttactacatgatcgggagcacattgctt |
38831456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 38814373 - 38814426
Alignment:
| Q |
79 |
aaacttgctactgttaatgtttactcttactacaagattgggagtacattgctt |
132 |
Q |
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| T |
38814373 |
aaacttgctactgttaatgtttattcttattacaagattgggagcaaattgctt |
38814426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 38818761 - 38818812
Alignment:
| Q |
61 |
cttagcatagaacttcttaaacttgctactgttaatgtttactcttactaca |
112 |
Q |
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| T |
38818761 |
cttagcaaagaacttgctaaacttgctactgttaatgtttactcttattaca |
38818812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 17198153 - 17198081
Alignment:
| Q |
69 |
agaacttcttaaacttgctactgttaatgtttactcttactacaagattgggagtacattgctttgaaggtat |
141 |
Q |
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| T |
17198153 |
agaacttgctaaacttgctactgttaatgtttactcttatcataagattgggagtaaattgcttggaaggtat |
17198081 |
T |
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