View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10198_low_10 (Length: 294)
Name: NF10198_low_10
Description: NF10198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10198_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 34395789 - 34395514
Alignment:
| Q |
5 |
gattatatatcagaatcacttccagactgtgtaaaagcttgtgctttggaggattagaaacatttaagattttataattcgaatcaatcatgtacaaaac |
104 |
Q |
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| T |
34395789 |
gattgtatatcagaatcacttccagactgtgtaaaagcttgtgctttggaggatttgaaacatttaagattttataattcgaatcaatcatgtacaaaac |
34395690 |
T |
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| Q |
105 |
atttttgtggtccacgacgtatataaaattttataaattgatgtttttggttcatttacaaacgacaacacaaaaccataaacatttttctagtaaatat |
204 |
Q |
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| T |
34395689 |
atttttgtggtctacgacgtatagaaacttttacaaattgatgtttttggttcatttacaaacgacaacacaaaaccataaacatttttccagtaaatat |
34395590 |
T |
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| Q |
205 |
aaacaccaagctagttgtagtgtacaataaggggggaaaacctaatgtatttaggatatatgttgatttcacactct |
281 |
Q |
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| T |
34395589 |
aaacaccaagctagttgtagtgtacaataag-ggggtaaacctaatgtatttaggatatatgttgatttcacactct |
34395514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 5610825 - 5610870
Alignment:
| Q |
105 |
atttttgtggtccacgacgtatataaaattttataaattgatgttt |
150 |
Q |
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| T |
5610825 |
atttttgtggtccatgacaaatataaaattttataaattggtgttt |
5610870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 34341283 - 34341227
Alignment:
| Q |
105 |
atttttgtggtccacgacgtatataaaattttataaattgatgtttttggttcattt |
161 |
Q |
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| T |
34341283 |
atttttgtggtccacgacgcacaaaaacttgtataaattggtgtgtttggttcattt |
34341227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 26719574 - 26719712
Alignment:
| Q |
105 |
atttttgtggtccacgacgtatataaaattttataaattgatgtttttggttcatttacaaacgacaacacaaaaccataaacatttttctagtaaatat |
204 |
Q |
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| T |
26719574 |
atttttgtggttcacgacacatataacattatacaaattggtgtgtttggttcattttcaaatcacgtcatagaaccttgaacacttatctagtagatat |
26719673 |
T |
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| Q |
205 |
aaacaccaagctagttgtagtgtacaataaggggggaaa |
243 |
Q |
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| T |
26719674 |
gaacactaagctagttgtagtttactacaatgggggaaa |
26719712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 13063461 - 13063394
Alignment:
| Q |
154 |
gttcatttacaaacgacaacacaaaaccataaacatttttctagtaaatataaacaccaagctagttg |
221 |
Q |
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| T |
13063461 |
gttcatttgcaaaccacaccacataaccattaacatttatccaatagatataaacaccaagctagttg |
13063394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 17365544 - 17365642
Alignment:
| Q |
129 |
aaaattttataaattgatgtttttggttcatttacaaacgacaacacaaaaccataaacatttttctagtaaatataaacaccaagctagttgtagtgta |
228 |
Q |
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| T |
17365544 |
aaaattctataaattggggtgtttggttcatttgtaaaccacaacataa--ccatgaacacttatctagttgatgtaaacaccaaactagttgtagtgta |
17365641 |
T |
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