View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10198_low_12 (Length: 251)

Name: NF10198_low_12
Description: NF10198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10198_low_12
NF10198_low_12
[»] chr6 (7 HSPs)
chr6 (10-238)||(30700348-30700577)
chr6 (85-136)||(7513024-7513075)
chr6 (94-158)||(30718807-30718871)
chr6 (94-137)||(5096030-5096073)
chr6 (5-68)||(30718582-30718644)
chr6 (97-137)||(5897653-5897693)
chr6 (96-136)||(24666008-24666048)
[»] chr5 (4 HSPs)
chr5 (91-161)||(32516727-32516797)
chr5 (97-136)||(42504293-42504332)
chr5 (101-137)||(25396849-25396885)
chr5 (98-162)||(35615454-35615518)
[»] chr7 (8 HSPs)
chr7 (96-161)||(21517425-21517490)
chr7 (85-137)||(36101811-36101863)
chr7 (97-136)||(26332919-26332958)
chr7 (91-161)||(35922425-35922495)
chr7 (97-137)||(44401173-44401213)
chr7 (97-136)||(47796198-47796237)
chr7 (98-136)||(6072249-6072287)
chr7 (98-136)||(46938825-46938863)
[»] chr1 (6 HSPs)
chr1 (97-162)||(12930357-12930422)
chr1 (97-136)||(25715372-25715411)
chr1 (86-161)||(52832217-52832292)
chr1 (98-136)||(27520254-27520292)
chr1 (91-136)||(51812706-51812751)
chr1 (97-138)||(52981453-52981494)
[»] chr8 (9 HSPs)
chr8 (94-136)||(37768476-37768518)
chr8 (86-136)||(43013227-43013277)
chr8 (96-136)||(42584556-42584596)
chr8 (97-131)||(34692602-34692636)
chr8 (97-134)||(30559892-30559929)
chr8 (88-137)||(33076320-33076369)
chr8 (97-161)||(29520821-29520885)
chr8 (97-137)||(35914647-35914687)
chr8 (97-161)||(43904711-43904775)
[»] chr4 (9 HSPs)
chr4 (98-136)||(20601699-20601737)
chr4 (97-159)||(30480297-30480359)
chr4 (98-136)||(46749744-46749782)
chr4 (97-133)||(1965679-1965715)
chr4 (97-137)||(33225881-33225921)
chr4 (98-158)||(44385005-44385065)
chr4 (97-161)||(51421902-51421966)
chr4 (98-134)||(52280522-52280558)
chr4 (90-138)||(53540485-53540533)
[»] chr3 (7 HSPs)
chr3 (89-161)||(55384056-55384128)
chr3 (97-136)||(39208805-39208844)
chr3 (96-135)||(51027756-51027795)
chr3 (97-135)||(23534616-23534654)
chr3 (94-128)||(30797865-30797899)
chr3 (91-128)||(7120788-7120825)
chr3 (97-137)||(54365021-54365061)
[»] chr2 (4 HSPs)
chr2 (94-128)||(32178133-32178167)
chr2 (97-133)||(10516795-10516831)
chr2 (97-161)||(19336939-19337003)
chr2 (97-137)||(26670964-26671004)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 30700348 - 30700577
Alignment:
Q  10 ttgtgttatttttctctcatgaaaagcctcaattaaattttt-cgctttaggc-tcataatcaattgggtcaattttgtcaactatatagatcaaattac 107  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||     ||||||||||||||||||||||||    
T  30700348 ttgtgttatttttctctcatgaaaagcctcaatttaattttttcgctttaggcctcataatcaattgggtcggccctgtcaactatatagatcaaattac 30700447  T
Q  108 gtcataatattctatcataaatcata---tttttattcaatttactaatctctaaattaaattttcttaatttctcttcaaaaagttacaggtcattctc 204  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  30700448 gtcataatattctatcataaatcatactttttttattcaatttactaatctctaaattatattttcttaatttctcttcaaaaaattacaggtcattctc 30700547  T
Q  205 tacgtacatttagtgatctgactatcttccatct 238  Q
        |||||| |||||||||||||||||||||||    
T  30700548 ----tacattcagtgatctgactatcttccatct 30700577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 7513024 - 7513075
Alignment:
Q  85 gtcaactatatagatcaaattacgtcataatattctatcataaatcatattt 136  Q
    |||||||| |||||||||||||||||||||| |||||||||||| |||||||    
T  7513024 gtcaactacatagatcaaattacgtcataatgttctatcataaaccatattt 7513075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 30718807 - 30718871
Alignment:
Q  94 atagatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctcta 158  Q
    ||||||||||||| ||||||| ||  ||||||||||| |||||| |||||| |||| ||||||||    
T  30718807 atagatcaaattatgtcataaaatgttatcataaatcttattttgattcaacttaccaatctcta 30718871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 5096073 - 5096030
Alignment:
Q  94 atagatcaaattacgtcataatattctatcataaatcatatttt 137  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||    
T  5096073 atagatcaaattacgccataatgttctatcataaaccatatttt 5096030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 30718582 - 30718644
Alignment:
Q  5 atattttgtgttatttttctctcatgaaaagcctcaattaaatttttcgctttagg-ctcataat 68  Q
    |||||||||||||||||||| |||||||||  ||||||| ||  |||||||||||| ||||||||    
T  30718582 atattttgtgttatttttctttcatgaaaactctcaatttaa--tttcgctttaggtctcataat 30718644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 5897693 - 5897653
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttt 137  Q
    ||||||||||||||||||||||||| |||| | ||||||||    
T  5897693 gatcaaattacgtcataatattctaccatataccatatttt 5897653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 24666048 - 24666008
Alignment:
Q  96 agatcaaattacgtcataatattctatcataaatcatattt 136  Q
    ||||||||||| |||||||| |||||||||||| |||||||    
T  24666048 agatcaaattaagtcataatgttctatcataaaccatattt 24666008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 32516797 - 32516727
Alignment:
Q  91 tatatagatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaaat 161  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||  || ||| ||  ||||||||||||    
T  32516797 tatatcgatcaaattacgtcataatattctatcataaaccatatttgaatccaacttgttaatctctaaat 32516727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 42504293 - 42504332
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatattt 136  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  42504293 gatcaaattacgtcataatgttctatcataaaccatattt 42504332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 25396885 - 25396849
Alignment:
Q  101 aaattacgtcataatattctatcataaatcatatttt 137  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  25396885 aaattacgccataatattctattataaatcatatttt 25396849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 35615518 - 35615454
Alignment:
Q  98 atcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaaatt 162  Q
    ||||| ||| |||||||| ||||||||||||  |||||||||| ||| | | |||||||||||||    
T  35615518 atcaagttaggtcataatgttctatcataaactatatttttatccaactcattaatctctaaatt 35615454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 21517425 - 21517490
Alignment:
Q  96 agatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaaat 161  Q
    |||||||||||||||||||| || |||||||||||||||||  || ||| ||| ||||||||||||    
T  21517425 agatcaaattacgtcataatgttatatcataaatcatatttggatccaacttattaatctctaaat 21517490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 36101811 - 36101863
Alignment:
Q  85 gtcaactatatagatcaaattacgtcataatattctatcataaatcatatttt 137  Q
    |||||||| || ||||||||||||||||||| |||||||||||| ||||||||    
T  36101811 gtcaactacatggatcaaattacgtcataatgttctatcataaaccatatttt 36101863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 26332919 - 26332958
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatattt 136  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  26332919 gatcaaattacgtcataatattctatcataaaccatattt 26332958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 35922495 - 35922425
Alignment:
Q  91 tatatagatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaaat 161  Q
    ||||| |||||||||| |||||||| ||||||||||||||||||||  |||||| | | ||| ||||||||    
T  35922495 tatatggatcaaattaggtcataatgttctatcataaatcatatttagattcaactcattaacctctaaat 35922425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 44401173 - 44401213
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttt 137  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  44401173 gatcaaattacgtcataatgttctatcataaaacatatttt 44401213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 47796198 - 47796237
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatattt 136  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  47796198 gatcaaattacgccataatattctatcataaaccatattt 47796237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 6072287 - 6072249
Alignment:
Q  98 atcaaattacgtcataatattctatcataaatcatattt 136  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  6072287 atcaaactacgtcataatattctgtcataaatcatattt 6072249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 46938825 - 46938863
Alignment:
Q  98 atcaaattacgtcataatattctatcataaatcatattt 136  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  46938825 atcaaattacgtcataatattatatcataaaccatattt 46938863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 12930357 - 12930422
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaaatt 162  Q
    ||||||||||||||||||| ||||||||||||||||||||  || ||| | |||||||| ||||||    
T  12930357 gatcaaattacgtcataatcttctatcataaatcatatttggatccaactcactaatctttaaatt 12930422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 25715372 - 25715411
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatattt 136  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  25715372 gatcaaattacgccataatattctatcataaaccatattt 25715411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 52832292 - 52832217
Alignment:
Q  86 tcaactatatagatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaaat 161  Q
    |||||||||| ||||||||||||||||||| |||||||  |||  |||||| ||||||| |||  || ||||||||    
T  52832292 tcaactatatggatcaaattacgtcataatgttctatctgaaacaatatttgtattcaacttatcaacctctaaat 52832217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 27520254 - 27520292
Alignment:
Q  98 atcaaattacgtcataatattctatcataaatcatattt 136  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  27520254 atcaaattacatcataatgttctatcataaatcatattt 27520292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 51812751 - 51812706
Alignment:
Q  91 tatatagatcaaattacgtcataatattctatcataaatcatattt 136  Q
    |||||| || |||||||| ||||||||||||||||||| |||||||    
T  51812751 tatatatattaaattacggcataatattctatcataaaccatattt 51812706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 52981453 - 52981494
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatattttt 138  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  52981453 gatcaaattacaccataatattctatcataaaccatattttt 52981494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 37768518 - 37768476
Alignment:
Q  94 atagatcaaattacgtcataatattctatcataaatcatattt 136  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  37768518 atagatcaaattacgtcataatattctattataaattatattt 37768476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 43013227 - 43013277
Alignment:
Q  86 tcaactatatagatcaaattacgtcataatattctatcataaatcatattt 136  Q
    ||||||| ||| |||||||||||||||||||  ||||||||||||||||||    
T  43013227 tcaactacataaatcaaattacgtcataataacctatcataaatcatattt 43013277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 42584596 - 42584556
Alignment:
Q  96 agatcaaattacgtcataatattctatcataaatcatattt 136  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  42584596 agatcaaattacgtcataatgttctatcataaaccatattt 42584556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 34692636 - 34692602
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatca 131  Q
    |||||||||||| ||||||||||||||||||||||    
T  34692636 gatcaaattacgacataatattctatcataaatca 34692602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 30559929 - 30559892
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatat 134  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  30559929 gatcaaattacgtcataatgttctatcataaaccatat 30559892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 33076369 - 33076320
Alignment:
Q  88 aactatatagatcaaattacgtcataatattctatcataaatcatatttt 137  Q
    ||||| || ||||||||||| |||||||||||||| ||||| ||||||||    
T  33076369 aactacatggatcaaattacatcataatattctattataaaccatatttt 33076320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 29520885 - 29520821
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaaat 161  Q
    |||||||||||| |||||| |||||||||||| |||||||  || ||| | | ||||||||||||    
T  29520885 gatcaaattacgccataatgttctatcataaaccatatttggatccaactcattaatctctaaat 29520821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 35914647 - 35914687
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttt 137  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  35914647 gatcaaattacgccataatgttctatcataaaccatatttt 35914687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 43904711 - 43904775
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaaat 161  Q
    |||||||||||| |||||| |||||||||||| |||||||  || ||| | | ||||||||||||    
T  43904711 gatcaaattacgccataatgttctatcataaaccatatttagatccaactcattaatctctaaat 43904775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 20601699 - 20601737
Alignment:
Q  98 atcaaattacgtcataatattctatcataaatcatattt 136  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  20601699 atcaaattacgtcataatgttctatcataaatcatattt 20601737  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 30480359 - 30480297
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaa 159  Q
    |||||||||||||||||| ||||||||||||| ||||||||  | ||||| | ||||||||||    
T  30480359 gatcaaattacgtcataaaattctatcataaaccatattttagtccaattcattaatctctaa 30480297  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 46749782 - 46749744
Alignment:
Q  98 atcaaattacgtcataatattctatcataaatcatattt 136  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  46749782 atcaaattacgtcataatattttatcataaatcatattt 46749744  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 1965679 - 1965715
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcata 133  Q
    |||||||||||| |||| |||||||||||||||||||    
T  1965679 gatcaaattacgccatattattctatcataaatcata 1965715  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 33225881 - 33225921
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttt 137  Q
    |||||||| |||||||||| |||||||||||| ||||||||    
T  33225881 gatcaaatcacgtcataatgttctatcataaaacatatttt 33225921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 44385065 - 44385005
Alignment:
Q  98 atcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctcta 158  Q
    |||||||||| ||||||| |||||||||||| ||||||  ||| ||| ||| |||||||||    
T  44385065 atcaaattacatcataatgttctatcataaaccatattaatatccaacttattaatctcta 44385005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 51421966 - 51421902
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaaat 161  Q
    ||||||||||||||||||| |||||||||||| ||| |||  || ||||| | ||| ||||||||    
T  51421966 gatcaaattacgtcataatgttctatcataaaccatttttggatccaattcattaacctctaaat 51421902  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 52280558 - 52280522
Alignment:
Q  98 atcaaattacgtcataatattctatcataaatcatat 134  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  52280558 atcaaattacgtcataatgttctaacataaatcatat 52280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 53540533 - 53540485
Alignment:
Q  90 ctatatagatcaaattacgtcataatattctatcataaatcatattttt 138  Q
    |||||| |||||||||| | |||||| |||||||||||| |||||||||    
T  53540533 ctatatggatcaaattatgccataatgttctatcataaaccatattttt 53540485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 55384056 - 55384128
Alignment:
Q  89 actatatagatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaaat 161  Q
    |||| ||| |||||||||||||||||  ||||||||||||||||||||  |||||| ||| ||| || |||||    
T  55384056 actaaataaatcaaattacgtcataacgttctatcataaatcatatttagattcaacttattaacctataaat 55384128  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 39208844 - 39208805
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatattt 136  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  39208844 gatcaaattacgtcataatgttctatcataaaccatattt 39208805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 51027795 - 51027756
Alignment:
Q  96 agatcaaattacgtcataatattctatcataaatcatatt 135  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  51027795 agatcaaattacgtcataatgttctatcataaaccatatt 51027756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 23534616 - 23534654
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatt 135  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  23534616 gatcaaattacgccataatgttctatcataaatcatatt 23534654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 30797865 - 30797899
Alignment:
Q  94 atagatcaaattacgtcataatattctatcataaa 128  Q
    |||||||||||||||||||||| ||||||||||||    
T  30797865 atagatcaaattacgtcataatgttctatcataaa 30797899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 7120825 - 7120788
Alignment:
Q  91 tatatagatcaaattacgtcataatattctatcataaa 128  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  7120825 tatatggatcaaattacgtcataatattttatcataaa 7120788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 54365021 - 54365061
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttt 137  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  54365021 gatcaaattacgtcatagtgttctatcataaaccatatttt 54365061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 32178133 - 32178167
Alignment:
Q  94 atagatcaaattacgtcataatattctatcataaa 128  Q
    |||||||||||||||||||| ||||||||||||||    
T  32178133 atagatcaaattacgtcatagtattctatcataaa 32178167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 10516795 - 10516831
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcata 133  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  10516795 gatcaaattacgccataatattttatcataaatcata 10516831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 19336939 - 19337003
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttttattcaatttactaatctctaaat 161  Q
    |||||||||||| |||||| |||||||||||| |||||||  || ||| | | ||||||||||||    
T  19336939 gatcaaattacgccataatgttctatcataaaccatatttcgatccaactcattaatctctaaat 19337003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 26671004 - 26670964
Alignment:
Q  97 gatcaaattacgtcataatattctatcataaatcatatttt 137  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  26671004 gatcaaattacaccattatattctatcataaatcatatttt 26670964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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