View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10198_low_14 (Length: 244)
Name: NF10198_low_14
Description: NF10198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10198_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 34395888 - 34396045
Alignment:
| Q |
1 |
tatttatgtgacttgtcagtaatgttgaccacatgtttcagactcaccttgacttcattacggtctatgtttgcatagtgtctataaatacccattcata |
100 |
Q |
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| T |
34395888 |
tatttatgtgacttgtcagtaatgttgaccacatgtttcagactcaccttgacttcgttacagtctatgtttgcatagtgtctataaatacccattcata |
34395987 |
T |
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| Q |
101 |
tattcttcacaatttcacattccaactcacattctatctttttctttcatacttttct |
158 |
Q |
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| T |
34395988 |
tattcttcacaatttcacattccaactcacattctatctttttctttcatacttttct |
34396045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 34396118 - 34396190
Alignment:
| Q |
154 |
tttctcattagagtctccttctcccactcatcatcttgtattcccgtctcctccctttagaggatgtgtggga |
226 |
Q |
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| T |
34396118 |
tttctcattagagtctccttctcccactcatcatcttgtattcccatctcctccctttagaggatgtgcggga |
34396190 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 4087145 - 4087091
Alignment:
| Q |
102 |
attcttcacaatttcacattccaactcacattctatctttttctttcatactttt |
156 |
Q |
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| T |
4087145 |
attcttcacaatttctcattcaaactcacattctcttcttttctttcttactttt |
4087091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 29152517 - 29152567
Alignment:
| Q |
106 |
ttcacaatttcacattccaactcacattctatctttttctttcatactttt |
156 |
Q |
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| T |
29152517 |
ttcacaatttctcattccaagtcacattctctccttttctttcttactttt |
29152567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 39166189 - 39166245
Alignment:
| Q |
102 |
attcttcacaatttcacattccaactcacattctatctttttctttcatacttttct |
158 |
Q |
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||||||||||||||| ||||||||||||| || | |||| ||||||| ||| ||||| |
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| T |
39166189 |
attcttcacaatttctcattccaactcactttttttcttcttctttcttacctttct |
39166245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 241485 - 241518
Alignment:
| Q |
102 |
attcttcacaatttcacattccaactcacattct |
135 |
Q |
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| T |
241485 |
attcttcacaatttctcattccaactcacattct |
241518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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