View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10198_low_17 (Length: 241)
Name: NF10198_low_17
Description: NF10198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10198_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 47894167 - 47893945
Alignment:
| Q |
1 |
ccgtatcgagattttcttggagaagaatcaagaactgaggtaggagatgaaacaaatgattccggtgaagcgttatctgagacacggagttgatcaatgg |
100 |
Q |
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| T |
47894167 |
ccgtatcgagattttcttggagaagaatcaagaactgaggtaggagatgaaacaaatgattccggtgaagcgttatttgagacacggagttgatcaatgg |
47894068 |
T |
|
| Q |
101 |
tatgagcaaagaaacaaactcgtctccggcaaagggttccgtcgttacaaagctgagttctgtaacgagaaggatgaagccagcattcaaaaacaccatg |
200 |
Q |
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| T |
47894067 |
tatgagcaaagaaacaaactcgtctccggcaaagggttccgtcgttacaaagctgagttctgtaacgagaaggatgaagccagcattcaaaaacaccatg |
47893968 |
T |
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| Q |
201 |
agcgaagtggcaagaatcacctt |
223 |
Q |
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| T |
47893967 |
agcgaagtggcaagaatcacctt |
47893945 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 38748172 - 38748222
Alignment:
| Q |
156 |
agttctgtaacgagaaggatgaagccagcattcaaaaacaccatgagcgaa |
206 |
Q |
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| T |
38748172 |
agttctgtatctagcaggatgaagccagcattcaaaaacgccatgagcgaa |
38748222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 42926175 - 42926243
Alignment:
| Q |
135 |
ggttccgtcgttacaaagctgagttctgtaacgagaaggatgaagccagcattcaaaaacaccatgagc |
203 |
Q |
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| T |
42926175 |
ggttccgtctttacacggctgagtacggtaacgcgaaggatgaagccaacactcgaaaacaccatgagc |
42926243 |
T |
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