View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10198_low_20 (Length: 219)
Name: NF10198_low_20
Description: NF10198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10198_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 55336828 - 55336624
Alignment:
| Q |
1 |
aacaacattaacatgattacactcactgctacaacattaactggtattgcagccgcaactggtgctgatggtgcacaactgttggctctgaaactatcat |
100 |
Q |
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| T |
55336828 |
aacaacattaacatgattacactcactgctacaacattaacttgtattgcagccgcaactggtgctgatggtgcacaactgttggctctgaaactatcat |
55336729 |
T |
|
| Q |
101 |
ccactcttctgttttcagcagcaacttgtatgttgcttatcatgaacaagattcagccttcgcagctcgctgaggaacagcgcagtgctacaagattgtt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
55336728 |
ccactcttctgttttcagcagcaactggtatgttgcttatcatgaacaagattcagccttcgcagctcgctgaggaacagcgcaatgctacaagattgtt |
55336629 |
T |
|
| Q |
201 |
caaac |
205 |
Q |
| |
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||||| |
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| T |
55336628 |
caaac |
55336624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 55331390 - 55331186
Alignment:
| Q |
1 |
aacaacattaacatgattacactcactgctacaacattaactggtattgcagccgcaactggtgctgatggtgcacaactgttggctctgaaactatcat |
100 |
Q |
| |
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|||||||| |||||||| ||||| ||||||||||||||||| ||| ||| || |||| ||||||| ||| | | ||| |||||||| |||||||||| |
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| T |
55331390 |
aacaacatcaacatgatcacacttactgctacaacattaaccggtgttgtggctgcaagtggtgctattggcaccccacttttggctcttaaactatcat |
55331291 |
T |
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| Q |
101 |
ccactcttctgttttcagcagcaacttgtatgttgcttatcatgaacaagattcagccttcgcagctcgctgaggaacagcgcagtgctacaagattgtt |
200 |
Q |
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| T |
55331290 |
ccacacttttattttctgcagctacaagtatacttcttattatgaacaaaattcagccttcgcaactcgcggaagaacaaagaaacgctacaagattatt |
55331191 |
T |
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| Q |
201 |
caaac |
205 |
Q |
| |
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||||| |
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| T |
55331190 |
caaac |
55331186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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