View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10198_low_6 (Length: 337)
Name: NF10198_low_6
Description: NF10198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10198_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 3250755 - 3250435
Alignment:
| Q |
1 |
ctattgattagaccatgactcacaatggtactattggcatttattgattcgaaaggattcctaacaggattcttcgatggaaatataggagttatgctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3250755 |
ctattgattagaccatgactcacaatggtactattggcatttattgattcgaaaggattcctaacaggattcttcgatggaaatataggagttatgctgg |
3250656 |
T |
|
| Q |
101 |
gaggacgtggagcatgcacatttacggagtgcctcgtttcaaaagctgcaggcaaaactggtggacggtactcaatatttgaattgagaccaggaaacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3250655 |
gaggacgtggagcatgcacatttacggagtgccttgtttcaaaagctgcaggcaaaactggtggacggtactcaatatttgaattgagaccaggaaacac |
3250556 |
T |
|
| Q |
201 |
ccttgacactgaagaagttgcattggctgcaacagtaacaggcttttctgatgagaaaccgatagttggttgcaggaaaccattacttctaccatggtct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3250555 |
ccttgacactgaagaagttgcattggctgcaacagtaacaggcttttctgatgagaaaccgatagttggttgcaggaaaccattacttctaccatggtct |
3250456 |
T |
|
| Q |
301 |
actactgtcggactcatatct |
321 |
Q |
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||||||||||||||||||||| |
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| T |
3250455 |
actactgtcggactcatatct |
3250435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 100 - 269
Target Start/End: Complemental strand, 3262137 - 3261968
Alignment:
| Q |
100 |
ggaggacgtggagcatgcacatttacggagtgcctcgtttcaaaagctgcaggcaaaactggtggacggtactcaatatttgaattgagaccaggaaaca |
199 |
Q |
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||||| ||||||||||||| |||| |||| ||||||||||||||| ||| ||||||||||| ||| ||||||| |||| ||||||||||||||| | | |
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| T |
3262137 |
ggaggtcgtggagcatgcaactttatggagggcctcgtttcaaaagttgctggcaaaactggcggatggtactcggtattagaattgagaccaggagaaa |
3262038 |
T |
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| Q |
200 |
cccttgacactgaagaagttgcattggctgcaacagtaacaggcttttctgatgagaaaccgatagttgg |
269 |
Q |
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| T |
3262037 |
cccttgacactgaagaatttgcactggctgcaacagtcgcaggcttttccgatgagaaaccaacagttgg |
3261968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3262199 - 3262148
Alignment:
| Q |
1 |
ctattgattagaccatgactcacaatggtactattggcatttattgattcga |
52 |
Q |
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||||| |||||||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
3262199 |
ctattaattagaccatgactcacagtggtagtattaacatttattgattcga |
3262148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 27754317 - 27754636
Alignment:
| Q |
1 |
ctattgattagaccatgactcacaatggtactattggcatttattgattcgaaaggattcctaacaggattcttcgatggaaatataggagttatgctgg |
100 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
27754317 |
ctattaattagaccatgactcacaacggtactataagcatttatcgattcgaatggattcctaacaagatt-ttcgatggaaatataggagttatgctgg |
27754415 |
T |
|
| Q |
101 |
gaggacgtggagcatgcacatttacggagtgcctcgtttcaaaagctgcaggcaaaactggtggacggtactcaatatttgaattgagaccaggaaacac |
200 |
Q |
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||||| | |||||||||||||| | |||||||||| ||||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||||||| | |
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| T |
27754416 |
gaggatgcggagcatgcacattaatggagtgcctcatttcaaaagttgctggcaaaactggtggaccgtactcaatattagaattgagaccaggaaactc |
27754515 |
T |
|
| Q |
201 |
ccttgacactgaagaagttgcattggctgcaacagtaacaggcttttctgatgagaaaccgatagttggttgcaggaaaccattacttctaccatggtct |
300 |
Q |
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|||||||||||||||||||||| | ||||||||| | | || ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |
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| T |
27754516 |
ccttgacactgaagaagttgcacttgctgcaacaatgtcgggtttttctgatgagaaaccaatagttggttgcaggaaaccattacttctactacggtct |
27754615 |
T |
|
| Q |
301 |
actactgtcggactcatatct |
321 |
Q |
| |
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||| |||||||||||||||| |
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| T |
27754616 |
tctagtgtcggactcatatct |
27754636 |
T |
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