View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10198_low_7 (Length: 332)

Name: NF10198_low_7
Description: NF10198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10198_low_7
NF10198_low_7
[»] chr1 (14 HSPs)
chr1 (1-314)||(47718107-47718417)
chr1 (5-318)||(47745900-47746213)
chr1 (1-318)||(47713313-47713630)
chr1 (5-246)||(47760232-47760473)
chr1 (29-186)||(6512957-6513114)
chr1 (65-186)||(6500263-6500384)
chr1 (37-184)||(6517364-6517511)
chr1 (82-189)||(47772876-47772983)
chr1 (29-191)||(6507056-6507218)
chr1 (30-148)||(6521560-6521678)
chr1 (32-140)||(6523570-6523678)
chr1 (89-186)||(47777840-47777937)
chr1 (66-189)||(47764486-47764609)
chr1 (59-110)||(47673751-47673802)
[»] scaffold0341 (2 HSPs)
scaffold0341 (29-191)||(1081-1243)
scaffold0341 (29-191)||(8735-8897)
[»] chr5 (4 HSPs)
chr5 (89-194)||(28861927-28862032)
chr5 (89-194)||(28856650-28856755)
chr5 (89-171)||(28831454-28831536)
chr5 (53-186)||(27371748-27371881)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 47718107 - 47718417
Alignment:
Q  1 atcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcatttactttgtcagtgttttggccataagagaaattgtag 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47718107 atcattgagacaacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtag 47718206  T
Q  101 aaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagttgccattattgttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47718207 aaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagttgccattattgttta 47718306  T
Q  201 tacaatagttgcgcaaaaaatttggttggccttgggcttgagatacgataatgataataaaaagaagaacagaataaaaggaaaataatagcttgctaga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  47718307 tacaatagttgcgcaaaaaatttggttggccttgggcttgagatacgataatgataataaa---aagaacagaataaaaggaaaataatagcttgctaga 47718403  T
Q  301 aacagttgtcattc 314  Q
    ||||||||||||||    
T  47718404 aacagttgtcattc 47718417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 318
Target Start/End: Original strand, 47745900 - 47746213
Alignment:
Q  5 ttgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcatttactttgtcagtgttttggccataagagaaattgtagaaac 104  Q
    |||||| |||| ||||||| ||| ||||||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||    
T  47745900 ttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaac 47745999  T
Q  105 cgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagttgccattattgtttataca 204  Q
    ||||||||||||  ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47746000 cgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccattattgtttataca 47746099  T
Q  205 atagttgcgcaaaaaatttggttggccttgggcttgagatacgataatgataataaaaagaagaacagaataaaaggaaaataatagcttgctagaaaca 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||| |||    
T  47746100 atagttgcgcaaaaaatttggttggccttgggcttgagatacgataatgataataaaaaggagaaaagagtaaagggaaaataatagcttgctagataca 47746199  T
Q  305 gttgtcattctgat 318  Q
     |||||||| ||||    
T  47746200 attgtcattgtgat 47746213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 47713313 - 47713630
Alignment:
Q  1 atcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcatttactttgtcagtgttttggccataagagaaattgtag 100  Q
    ||||||||||  ||| |||||||| |||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||    
T  47713313 atcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtag 47713412  T
Q  101 aaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagttgccattattgttta 200  Q
    ||||||||||||||||  ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713413 aaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccattattgttta 47713512  T
Q  201 tacaatagttgcgcaaaaaatttggttggccttgggcttgagatacgataatgataataaaaagaagaacagaataaaaggaaaataatagcttgctaga 300  Q
    ||||| ||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||    
T  47713513 tacaagagtagcgcacaaaatctggttggccctgggcttgagatacgataatgataataaaaaggagaaaagagtaaaaggaaaataatagcttgctaga 47713612  T
Q  301 aacagttgtcattctgat 318  Q
    |||| |||||||||||||    
T  47713613 aacaattgtcattctgat 47713630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 47760232 - 47760473
Alignment:
Q  5 ttgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcatttactttgtcagtgttttggccataagagaaattgtagaaac 104  Q
    |||||| |||| ||||||||||| ||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||| | |||||||||||    
T  47760232 ttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgtagaaac 47760331  T
Q  105 cgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagttgccattattgtttataca 204  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  47760332 cgtagttgatttctgcgttggaagttagattggacaaaacggtgttgaggttgttttgataggtgctattggctgtgtagttgccattatcgtttttaca 47760431  T
Q  205 atagttgcgcaaaaaatttggttggccttgggcttgagatac 246  Q
    | |||||  || |||||  |||||| ||| ||||||||||||    
T  47760432 aaagttgtacagaaaatcaggttgggctttggcttgagatac 47760473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 6512957 - 6513114
Alignment:
Q  29 ggtttaacatctcctctgcagaggccaacggcatttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaag 128  Q
    ||||| ||||||||||| || || ||||  || ||||||||||| ||||||   ||||||||| |||| ||||||||||||||||| ||| |||||||||    
T  6512957 ggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaag 6513056  T
Q  129 ttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagtt 186  Q
    | ||| |||| | ||||||| | ||||| || ||||||||||| |||| |||||||||    
T  6513057 tgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagtt 6513114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 6500263 - 6500384
Alignment:
Q  65 actttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgat 164  Q
    ||||||||  |||||| |||||  || |||||||||||||||||||||||||||||||||||||| ||| | || ||||| ||| ||||||| || | ||    
T  6500263 actttgtcgctgttttcgccatgtgaaaaattgtagaaaccgtagttgatttctgtgttggaagtgagagttgataaaagtgtgttgaggtttttgtcat 6500362  T
Q  165 aggtgctattggctgtgtagtt 186  Q
    |||||||||| | |||||||||    
T  6500363 aggtgctatttgttgtgtagtt 6500384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 37 - 184
Target Start/End: Original strand, 6517364 - 6517511
Alignment:
Q  37 atctcctctgcagaggccaacggcatttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattg 136  Q
    |||||||||||| || ||||  || |||||||||||  |||||  |||||||||| | || ||||||||||||||||||||| |||||||||| ||| ||    
T  6517364 atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgagaatg 6517463  T
Q  137 gacaaaagggtgctgaggttgttttgataggtgctattggctgtgtag 184  Q
    || ||||||||| | |||||  | || |||||||| |||| |||||||    
T  6517464 gataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtag 6517511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 47772983 - 47772876
Alignment:
Q  82 gccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtg 181  Q
    |||||| |||||||||||||||||||||||||||||||| |  ||||  ||| |||||||||| ||  | |||||||| | |||||||||||||| ||||    
T  47772983 gccatatgagaaattgtagaaaccgtagttgatttctgtatgagaagaaagactggacaaaagagttttaaggttgttgtcataggtgctattggatgtg 47772884  T
Q  182 tagttgcc 189  Q
    ||||||||    
T  47772883 tagttgcc 47772876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 191
Target Start/End: Original strand, 6507056 - 6507218
Alignment:
Q  29 ggtttaacatctcctctgcagaggccaacggcatttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaag 128  Q
    ||||| ||||||||||| || || ||||  || ||||||||||| ||||||  |||||||||| |||| |||||||||||||| || ||| |||||||||    
T  6507056 ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaag 6507155  T
Q  129 ttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagttgccat 191  Q
    | ||| |||| | ||||||  |||||||  | || |||||||| |||| ||||||||| ||||    
T  6507156 tgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccat 6507218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 6521678 - 6521560
Alignment:
Q  30 gtttaacatctcctctgcagaggccaacggcatttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagt 129  Q
    |||| ||||||||||| || || ||||  || ||||||||||||||||| |  ||||||||| |||| ||||||||||||||||| ||| ||||||||||    
T  6521678 gtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgtttccataagaggaattatagaaaccgtagttgatatctttgttggaagt 6521579  T
Q  130 tagattggacaaaagggtg 148  Q
     ||| |||| |||||||||    
T  6521578 gagagtggataaaagggtg 6521560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 6523678 - 6523570
Alignment:
Q  32 ttaacatctcctctgcagaggccaacggcatttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagtta 131  Q
    |||||||| |||||||| || ||||  || ||||||||||  |||||||  || |  ||||||||||||||||||||||||||||  ||||||||||| |    
T  6523678 ttaacatcgcctctgcaaagaccaattgcgtttactttgtttgtgttttcaccgtttgagaaattgtagaaaccgtagttgatttgcgtgttggaagtga 6523579  T
Q  132 gattggaca 140  Q
    || ||||||    
T  6523578 gagtggaca 6523570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 47777937 - 47777840
Alignment:
Q  89 gagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagtt 186  Q
    |||||||||||||||||||| ||||||| |||||||||| | ||| |||| ||||| ||| |||||||  |||  |||||||| || | |||||||||    
T  47777937 gagaaattgtagaaaccgtaattgatttgtgtgttggaaatgagagtggataaaagtgtgttgaggtttgtttcgtaggtgctgtttgttgtgtagtt 47777840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 47764609 - 47764486
Alignment:
Q  66 ctttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgata 165  Q
    ||||||| | || ||||||||| ||||||||||||||||| || |||| |||| | | |||||  | | |||| ||||||||  | |||||||| |  ||    
T  47764609 ctttgtcggggtcttggccatatgagaaattgtagaaaccataattgacttctttatgggaagaaaaactggaaaaaagggttttaaggttgttgtcgta 47764510  T
Q  166 ggtgctattggctgtgtagttgcc 189  Q
    |||||||||||||||||| |||||    
T  47764509 ggtgctattggctgtgtaattgcc 47764486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 47673802 - 47673751
Alignment:
Q  59 gcatttactttgtcagtgttttggccataagagaaattgtagaaaccgtagt 110  Q
    ||||||||||||||||  | || |||||| ||||||||||||||||||||||    
T  47673802 gcatttactttgtcaggttcttcgccatacgagaaattgtagaaaccgtagt 47673751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 191
Target Start/End: Original strand, 1081 - 1243
Alignment:
Q  29 ggtttaacatctcctctgcagaggccaacggcatttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaag 128  Q
    ||||| ||||||||||| || || ||||  || ||||||||||| ||||||  |||||||||| |||| |||||||||||||| || ||| |||||||||    
T  1081 ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaag 1180  T
Q  129 ttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagttgccat 191  Q
    | ||| |||| | ||||||  |||||||  | || |||||||| |||| ||||||||| ||||    
T  1181 tgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccat 1243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 191
Target Start/End: Original strand, 8735 - 8897
Alignment:
Q  29 ggtttaacatctcctctgcagaggccaacggcatttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaag 128  Q
    ||||| ||||||||||| || || ||||  || ||||||||||| ||||||  |||||||||| |||| |||||||||||||| || ||| |||||||||    
T  8735 ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaag 8834  T
Q  129 ttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagttgccat 191  Q
    | ||| |||| | ||||||  |||||||  | || |||||||| |||| ||||||||| ||||    
T  8835 tgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccat 8897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 28861927 - 28862032
Alignment:
Q  89 gagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagttgc 188  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| | || ||||| ||| ||||||| | |||||| ||||| ||   |||||||||||    
T  28861927 gagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgctgttttttgtgtagttgc 28862026  T
Q  189 cattat 194  Q
    ||||||    
T  28862027 cattat 28862032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 28856650 - 28856755
Alignment:
Q  89 gagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagttgc 188  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| | || ||||| ||| ||||||| | |||||| ||||| ||   |||||||||||    
T  28856650 gagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgctgttttttgtgtagttgc 28856749  T
Q  189 cattat 194  Q
     |||||    
T  28856750 tattat 28856755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 28831454 - 28831536
Alignment:
Q  89 gagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgct 171  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| | || ||||| ||| ||||||| | |||||| |||||    
T  28831454 gagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgct 28831536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 27371748 - 27371881
Alignment:
Q  53 ccaacggcatttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctga 152  Q
    |||| ||| |||| |||||| | || ||||||||| ||||||||||| ||||||||||| |||||||||| |||||  | | || | | ||||||  | |    
T  27371748 ccaatggcctttattttgtctgggtgttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaa 27371847  T
Q  153 ggttgttttgataggtgctattggctgtgtagtt 186  Q
    ||||||| |  |||||||||||| ||||||||||    
T  27371848 ggttgttgtcgtaggtgctattgactgtgtagtt 27371881  T

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