View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10198_low_8 (Length: 323)
Name: NF10198_low_8
Description: NF10198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10198_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 42186288 - 42186446
Alignment:
| Q |
25 |
tgatctaaatgaaagatcaagttcaatactgttacattacactcacgtgtaaggttaa-ttgatgtccattcatccgaccaataagcaaccacaatgcac |
123 |
Q |
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| T |
42186288 |
tgatctaaatgaaagatcaagttcaatactgttacattacactcatgtgtagtgtaaggttgatgtccattcatccgaccaataagcaacaacaatgcac |
42186387 |
T |
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| Q |
124 |
tcttttttgttgttgacaaacgatagttaactcattgtaggcccgagtaagtgttggtt |
182 |
Q |
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| T |
42186388 |
tcttttttgttgttgacaaacgatagttaactcattgtaggcccgagtaagtgttggtt |
42186446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 42186570 - 42186615
Alignment:
| Q |
266 |
attaaagattcaagaaattaactttaaaatgataattgttattgat |
311 |
Q |
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| T |
42186570 |
attaaagattcaagaaattaactttaaaatgataattgttattgat |
42186615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 42186455 - 42186485
Alignment:
| Q |
214 |
taggagaacatgtaaagcattatacacctta |
244 |
Q |
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| T |
42186455 |
taggagaacatgtaaagcattatacacctta |
42186485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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