View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10199_high_2 (Length: 400)
Name: NF10199_high_2
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 2544072 - 2543687
Alignment:
| Q |
1 |
cataggtataaatccattaaaggtataaatcatgtattttcttatagaacaagtagaggtagtaaagtatgggtagtaggtcatattcacacatgatatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2544072 |
cataggtataaatccattaaaggtataaatcatgtattttcttatagaacaagtagaggtagtcaagtatgggtagtaggtcatattcacacatgatatt |
2543973 |
T |
|
| Q |
101 |
gaattggtttgattcttatcataagatacatactgcatttagcttaccaaatggttatgaaatgatggtatgattatgtttgtaatttctgtcaaccatt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2543972 |
gaattggtttgattcttatcataatatacatactacatttagcttaccaaatggttatgaaatgatggtatgattatgtttgtaatttctgtcaagcatt |
2543873 |
T |
|
| Q |
201 |
atgagtcaacttatgatattgttgaatcaaacaatttcatcttgaatgagtcctttagaaattaatttgaattatacgtattcaactttagggcctaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2543872 |
atgagtcaacttatgatattgttgaatcaaacaatttcatcttgaatgagtcctttagaaactaatttgaattataagtattcaactttagggcctaatt |
2543773 |
T |
|
| Q |
301 |
tgaaatgtttgctaacctaatatttctgagactactcttgacaaggaaactaattccttgcatttttaagtgcatttatttctgat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2543772 |
tgaaatgtttgctaacctaatatttctgagactactcttgacaaggaaactaattccttgcatttttaagtgcatttatttctgat |
2543687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University