View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10199_high_4 (Length: 332)
Name: NF10199_high_4
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10199_high_4 |
 |  |
|
[»] scaffold0257 (2 HSPs) |
 |  |  |
|
[»] scaffold0922 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 8020974 - 8020661
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt |
100 |
Q |
|
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
8020974 |
ttcaaaatgaaaagggcgatgagataacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt |
8020875 |
T |
 |
Q |
101 |
tcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttggttgtcaccttcttcaacacttatttcgctaa |
200 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
T |
8020874 |
tcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctatagctctttggttgtcaccttcttcaacacttatttcgctaa |
8020775 |
T |
 |
Q |
201 |
cctgtcaatattgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaagaaatatgtatatatttggagaggaatatccaagtgattt |
300 |
Q |
|
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
8020774 |
cctgtcaatattgtggtataattcaattccggtactgacaaagtgtaaaaaagaatacaagaaatatgtatatatttggagaggaatatccaagtgattt |
8020675 |
T |
 |
Q |
301 |
tcacatggccttca |
314 |
Q |
|
|
|||||||||||||| |
|
|
T |
8020674 |
tcacatggccttca |
8020661 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 22965088 - 22965036
Alignment:
Q |
263 |
aatatgtatatatttggagaggaatatccaagtgattttcacatggccttcat |
315 |
Q |
|
|
|||| ||||||||||||||||||||||| |||||| ||| ||| ||||||||| |
|
|
T |
22965088 |
aataagtatatatttggagaggaatatcgaagtgaatttgacacggccttcat |
22965036 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 22399588 - 22399536
Alignment:
Q |
263 |
aatatgtatatatttggagaggaatatccaagtgattttcacatggccttcat |
315 |
Q |
|
|
|||| |||||||||||||||||||||| |||||| ||| ||| ||||||||| |
|
|
T |
22399588 |
aataagtatatatttggagaggaatatagaagtgaatttgacacggccttcat |
22399536 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 28151792 - 28151610
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt |
100 |
Q |
|
|
|||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
T |
28151792 |
ttcaaaataaaaagggcgatgaggtaacttaagaaaataaaagcgatccaaagattcttcaccttgatcatcattagtgttactagtttcctgccagatt |
28151693 |
T |
 |
Q |
101 |
tcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttggttgtcaccttcttc |
183 |
Q |
|
|
||||||||||||||||||||||||| ||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||| |
|
|
T |
28151692 |
tcaacatcaacatcttgagtggttacaggctttgttatgtcaattggagtataagctattgctctttggttgtcaccttcttc |
28151610 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 17744494 - 17744615
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt |
100 |
Q |
|
|
|||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| || |||| | || |||||||| || |||||||||||||||||| |
|
|
T |
17744494 |
ttcaaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccagatt |
17744593 |
T |
 |
Q |
101 |
tcaacatcaacatcttgagtgg |
122 |
Q |
|
|
|||||||||||||||||||||| |
|
|
T |
17744594 |
tcaacatcaacatcttgagtgg |
17744615 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 19045814 - 19045935
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt |
100 |
Q |
|
|
|||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| || |||| | || |||||||| || |||||||||||||||||| |
|
|
T |
19045814 |
ttcaaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccagatt |
19045913 |
T |
 |
Q |
101 |
tcaacatcaacatcttgagtgg |
122 |
Q |
|
|
|||||||||||||||||||||| |
|
|
T |
19045914 |
tcaacatcaacatcttgagtgg |
19045935 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 28037581 - 28037413
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt |
100 |
Q |
|
|
|||||||||||||||| ||||||||||||| |||||| || || |||||||||| |||| |||| || | |||||||||||||||||||| ||||| || |
|
|
T |
28037581 |
ttcaaaatgaaaagggtgatgaggtaactttagaaaataacactgatccaaagagtctttaccttgaccatcattagtgttactagtttcgcgccagttt |
28037482 |
T |
 |
Q |
101 |
tcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttgg |
169 |
Q |
|
|
| | ||||||||||| |||||| | |||||||||||||| ||||||| ||||||||| ||||||||| |
|
|
T |
28037481 |
ttgagatcaacatcttcagtggtaacaggctttgttatggtaattgaaggagaagctatggctctttgg |
28037413 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 11421126 - 11420963
Alignment:
Q |
5 |
aaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaa |
104 |
Q |
|
|
|||||||||||| |||| |||||||||||||| ||||| |||||||||| || |||||| |||| ||||||| |||||||||||||| ||||||| || |
|
|
T |
11421126 |
aaatgaaaagggtgatgtcgtaacttaagaaaataaaactgatccaaagagtcatcaccttgatcatcattagccttactagtttcctgacagattttaa |
11421027 |
T |
 |
Q |
105 |
catcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttg |
168 |
Q |
|
|
|||||||||||||| |||| ||||||||||||||| ||| || ||||||||| ||| |||| |
|
|
T |
11421026 |
catcaacatcttgaatggtagcaggctttgttatggcaatttgaggagaagctatggctatttg |
11420963 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 28150109 - 28149970
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt |
100 |
Q |
|
|
|||||||||||||||| |||||| ||||||||||||| |||| ||||| |||| ||||||||| |||| |||||||||||||||||||||||| || | |
|
|
T |
28150109 |
ttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatcctaagactcttcaccttgatcatcattagtgttactagtttcctgcaagtta |
28150010 |
T |
 |
Q |
101 |
tcaacatcaacatcttgagtggttagaggctttgttatgg |
140 |
Q |
|
|
| ||||| ||| ||||||||||| |||||| ||||||||| |
|
|
T |
28150009 |
ttaacatgaacttcttgagtggtaagaggccttgttatgg |
28149970 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 28151364 - 28151276
Alignment:
Q |
176 |
ccttcttcaacacttatttcgctaacctgtcaatattgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaagaaa |
264 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||| ||||||||||||||||| |
|
|
T |
28151364 |
ccttcttcaacacttatttcgctaacctgtcaatattgtagtataattcaatttctgtactgacaaagtgtgaaaaagaatacaagaaa |
28151276 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 27458885 - 27458981
Alignment:
Q |
45 |
gatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggc |
141 |
Q |
|
|
|||||||||| ||||||||| |||| || ||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
T |
27458885 |
gatccaaagagtcttcaccttgatcatccttagtcttgctagtttcctgccagattttaacatcaacatcttgagtggtaagaggctttgttatggc |
27458981 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 8539262 - 8539381
Alignment:
Q |
4 |
aaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttca |
103 |
Q |
|
|
||||||||||||| || |||||||||||||||| ||||| ||||||| |||||||||||| ||| |||||||||||||||||||||||| | || | |
|
|
T |
8539262 |
aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagttta |
8539361 |
T |
 |
Q |
104 |
acatcaacatcttgagtggt |
123 |
Q |
|
|
|||||||||||||||||||| |
|
|
T |
8539362 |
acatcaacatcttgagtggt |
8539381 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 27954468 - 27954347
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt |
100 |
Q |
|
|
||||||||||||||| |||||||||||||| ||||| || || ||||||||| | ||||||| |||| |||||||||||||||||||||||||||||| |
|
|
T |
27954468 |
ttcaaaatgaaaaggt-gatgaggtaacttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgttactagtttcctgccagatt |
27954370 |
T |
 |
Q |
101 |
tcaacatcaacatcttgagtggt |
123 |
Q |
|
|
| | ||||||||| ||||||||| |
|
|
T |
27954369 |
ttatcatcaacatattgagtggt |
27954347 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 28162018 - 28161925
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc |
94 |
Q |
|
|
|||||||||||||||| |||||| ||||||||||||| |||| |||||||||| ||||||||| |||| |||||||||||||||||||||||| |
|
|
T |
28162018 |
ttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcattagtgttactagtttcctgc |
28161925 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 28186061 - 28185968
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc |
94 |
Q |
|
|
|||||||||||||||| |||||| ||||||||||||| |||| |||||||||| ||||||||| |||| |||| ||||||||||||||||||| |
|
|
T |
28186061 |
ttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcatcagtgttactagtttcctgc |
28185968 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 27776634 - 27776525
Alignment:
Q |
31 |
aagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggc |
130 |
Q |
|
|
||||||| |||| |||||||||| | ||||||| ||| |||||||| ||||||||||||||| || |||||||||||||||||||||| || ||||| |
|
|
T |
27776634 |
aagaaaataaaattgatccaaagagttttcaccttgatgatcattagtcttactagtttcctgcaagttttcaacatcaacatcttgagtagtaggaggc |
27776535 |
T |
 |
Q |
131 |
tttgttatgg |
140 |
Q |
|
|
|||||||||| |
|
|
T |
27776534 |
tttgttatgg |
27776525 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 27920386 - 27920262
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaa---cttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag |
97 |
Q |
|
|
||||||||||||||| |||||||||| |||| ||||| || || ||||||||| | ||||||| |||| ||||||||||||||||||||||||||| |
|
|
T |
27920386 |
ttcaaaatgaaaaggt-gatgaggtaattgcttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgttactagtttcctgccag |
27920288 |
T |
 |
Q |
98 |
atttcaacatcaacatcttgagtggt |
123 |
Q |
|
|
|||| | ||||||||| ||||||||| |
|
|
T |
27920287 |
attttatcatcaacatattgagtggt |
27920262 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 28151026 - 28150975
Alignment:
Q |
263 |
aatatgtatatatttggagaggaatatccaagtgattttcacatggccttca |
314 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
28151026 |
aatatgtatatatttggagaggaatatccaagtgattttcacatggccttca |
28150975 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 28003270 - 28003224
Alignment:
Q |
268 |
gtatatatttggagaggaatatccaagtgattttcacatggccttca |
314 |
Q |
|
|
||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
T |
28003270 |
gtatatattgggagaggattatccaagtgattttcacatggccttca |
28003224 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 28056612 - 28056547
Alignment:
Q |
75 |
tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg |
140 |
Q |
|
|
|||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| ||||||||| |
|
|
T |
28056612 |
tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg |
28056547 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 28067037 - 28066972
Alignment:
Q |
75 |
tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg |
140 |
Q |
|
|
|||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| ||||||||| |
|
|
T |
28067037 |
tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg |
28066972 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 28055011 - 28054960
Alignment:
Q |
210 |
attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaag |
261 |
Q |
|
|
||||| ||||||||||||||| | ||||||||||||| ||||| |||||||| |
|
|
T |
28055011 |
attgtagtataattcaattcctgcattgacaaagtgttaaaaaaaatacaag |
28054960 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 28065436 - 28065385
Alignment:
Q |
210 |
attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaag |
261 |
Q |
|
|
||||| ||||||||||||||| | ||||||||||||| ||||| |||||||| |
|
|
T |
28065436 |
attgtagtataattcaattcctgcattgacaaagtgttaaaaaaaatacaag |
28065385 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 8539704 - 8539756
Alignment:
Q |
210 |
attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaaga |
262 |
Q |
|
|
||||| ||||||||||||||| | |||| ||||||| ||||||||||||||| |
|
|
T |
8539704 |
attgtagtataattcaattcctgcattggaaaagtgttaaaaagaatacaaga |
8539756 |
T |
 |
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HSP Overview ] [
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Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 28149251 - 28149203
Alignment:
Q |
210 |
attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatac |
258 |
Q |
|
|
||||| ||||||||||||||| | ||||||||||||| |||||||||| |
|
|
T |
28149251 |
attgtagtataattcaattcctgcattgacaaagtgttcaaaagaatac |
28149203 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 28161498 - 28161470
Alignment:
Q |
176 |
ccttcttcaacacttatttcgctaacctg |
204 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
28161498 |
ccttcttcaacacttatttcgctaacctg |
28161470 |
T |
 |
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HSP Overview ] [
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Alignment Overview ]
Target: scaffold0257 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 19219 - 19079
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt |
100 |
Q |
|
|
|||||||||||||||| |||||||||||||||||||| || | |||||||||| ||||||||| |||| ||| || ||||||||||||||||| || | |
|
|
T |
19219 |
ttcaaaatgaaaagggtgatgaggtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagtta |
19120 |
T |
 |
Q |
101 |
tcaacatcaacatcttgagtggttagaggctttgttatggc |
141 |
Q |
|
|
| ||||||||||||||||||||| ||||||||||||||||| |
|
|
T |
19119 |
ttaacatcaacatcttgagtggtaagaggctttgttatggc |
19079 |
T |
 |
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HSP Overview ] [
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Alignment Overview ]
Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 18672 - 18626
Alignment:
Q |
210 |
attgtggtataattcaattccggtattgacaaagtgtaaaaaagaat |
256 |
Q |
|
|
||||| ||||||||||||||| | ||||||||||||| ||||||||| |
|
|
T |
18672 |
attgtagtataattcaattcctgcattgacaaagtgtcaaaaagaat |
18626 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0922 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0922
Description:
Target: scaffold0922; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1882 - 1819
Alignment:
Q |
1 |
ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacct |
64 |
Q |
|
|
|||||||||||||||| |||| ||||||||||||||| ||||||||| ||| | ||||||||| |
|
|
T |
1882 |
ttcaaaatgaaaagggtgatgtggtaacttaagaaaataaaaccgattgaaatactcttcacct |
1819 |
T |
 |
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HSP Overview ] [
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Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 9328792 - 9328820
Alignment:
Q |
176 |
ccttcttcaacacttatttcgctaacctg |
204 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
9328792 |
ccttcttcaacacttatttcgctaacctg |
9328820 |
T |
 |
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HSP Overview ] [
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Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 9382569 - 9382597
Alignment:
Q |
176 |
ccttcttcaacacttatttcgctaacctg |
204 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
9382569 |
ccttcttcaacacttatttcgctaacctg |
9382597 |
T |
 |
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HSP Overview ] [
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Alignment Overview ]
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