View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10199_high_5 (Length: 307)
Name: NF10199_high_5
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 36205425 - 36205727
Alignment:
| Q |
4 |
ttaagtagtatccgtgaagtaaacttattcaatcattaaagaaaagatgtttcttatcacacca--------gggataagaaaaagtacaatcatttgca |
95 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
36205425 |
ttaagtagtatccatgaagtaaacttattcaatcaataaagaaaagatgtttcttatcacaccaccctcaaagggataagaagaagtacaatcatttgca |
36205524 |
T |
|
| Q |
96 |
taatttcaagcatccattactcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaagcaagtttgaatttttcaataa |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||||| || |||||||||| |
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| T |
36205525 |
taatttcaagcatccattactcttccaattctcaaatatacttgaaacttgacagtcttttggccatcttcaccacgagcaagtttaaaattttcaataa |
36205624 |
T |
|
| Q |
196 |
catcctccttaagcagttcaacccctttattctttgatgtctggtatgctgaccttgatcttatataagtcaagaaatcatcaaaatccatcacagtctc |
295 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36205625 |
catcctccttaagcagttcaaccccgttattctttgatgtctgatatgatgaccttgatcttatataagtcaagaaatcatcaaaatccatcacagtctc |
36205724 |
T |
|
| Q |
296 |
tgc |
298 |
Q |
| |
|
||| |
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| T |
36205725 |
tgc |
36205727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 67 - 295
Target Start/End: Original strand, 36208583 - 36208811
Alignment:
| Q |
67 |
agggataagaaaaagtacaatcatttgcataatttcaagcatccattactcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttc |
166 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||| |||| |
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| T |
36208583 |
agggataagaaaaagtacaatcatttgcatattttcaagcatcccttactcttccaattctcagatatacttgaaacttggcaatcttttttccatcttc |
36208682 |
T |
|
| Q |
167 |
accccaagcaagtttgaatttttcaataacatcctccttaagcagttcaacccctttattctttgatgtctggtatgctgaccttgatcttatataagtc |
266 |
Q |
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|||||||||||||||||||||||||||||||| || |||| || |||||||||||||||||||||| ||| || ||||||||||||||||||||| || |
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| T |
36208683 |
tccccaagcaagtttgaatttttcaataacatcatcagtaagaagctcaacccctttattctttgatgactgataagctgaccttgatcttatataattc |
36208782 |
T |
|
| Q |
267 |
aagaaatcatcaaaatccatcacagtctc |
295 |
Q |
| |
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||||| ||||| ||||||||||||||||| |
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| T |
36208783 |
aagaagtcatccaaatccatcacagtctc |
36208811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 114 - 281
Target Start/End: Complemental strand, 35400147 - 35399980
Alignment:
| Q |
114 |
actcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaagcaagtttgaatttttcaataacatcctccttaagcagtt |
213 |
Q |
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|||||||||||||||| ||| ||| ||||||||||||| || |||||| |||||||||||||||| || |||||||||| || ||||| ||| || | |
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| T |
35400147 |
actcttccaattctcagataaactggaaacttggcagttttgtggccatcttcaccccaagcaagcttaaatttttcaactacgtcctcaccaagaagct |
35400048 |
T |
|
| Q |
214 |
caacccctttattctttgatgtctggtatgctgaccttgatcttatataagtcaagaaatcatcaaaa |
281 |
Q |
| |
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| || || || ||||||| |||||| || ||||||| |||| ||||||| || || ||| |||||||| |
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| T |
35400047 |
ccacacccttcttctttgctgtctgataagctgaccatgattttatatatgttaacaaaccatcaaaa |
35399980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 114 - 281
Target Start/End: Complemental strand, 35405076 - 35404909
Alignment:
| Q |
114 |
actcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaagcaagtttgaatttttcaataacatcctccttaagcagtt |
213 |
Q |
| |
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|||||||||||||||| ||| ||| ||||||||||||| || |||||| |||||||||||||||| || |||||||||| || ||||| ||| || | |
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| T |
35405076 |
actcttccaattctcagataaactggaaacttggcagttttgtggccatcttcaccccaagcaagcttaaatttttcaactacgtcctcaccaagaagct |
35404977 |
T |
|
| Q |
214 |
caacccctttattctttgatgtctggtatgctgaccttgatcttatataagtcaagaaatcatcaaaa |
281 |
Q |
| |
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| || || || | ||||| |||||| || ||||||| |||| |||||||||| || ||| |||||||| |
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| T |
35404976 |
ccacacccttctcctttgctgtctgataagctgaccatgattttatataagttaacaaaccatcaaaa |
35404909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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