View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10199_high_8 (Length: 240)

Name: NF10199_high_8
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10199_high_8
NF10199_high_8
[»] chr2 (1 HSPs)
chr2 (7-225)||(41649515-41649733)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 41649733 - 41649515
Alignment:
Q  7 aaaaaatgttatatctaataaaaacaaatgatttgtaaataaagacacaggtaccgtccattgaaataatctcnnnnnnnnnnnnnnnttgttatcatga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||               ||||||||||||    
T  41649733 aaaaaatgttatatctaataaaaacaaatgatttgtaaataaagacacaggtaccgtcaattgaaataatctcaaaaaaaaatataatttgttatcatga 41649634  T
Q  107 tatttgtacgaagcttcaacaaccatttatcaataattaatatttgtagaagaatgaaaatttcattcaaatttttccatacacatgaatgaatctaaac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41649633 tatttgtacgaagcttcaacaaccatttatcaataattaatatttgtagaagaatgaaaatttcattcaaatttttccatacacatgaatgaatctaaac 41649534  T
Q  207 tctaaccaattggtaaaga 225  Q
    |||||||| ||| ||||||    
T  41649533 tctaaccacttgataaaga 41649515  T

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