View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10199_high_8 (Length: 240)
Name: NF10199_high_8
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 41649733 - 41649515
Alignment:
| Q |
7 |
aaaaaatgttatatctaataaaaacaaatgatttgtaaataaagacacaggtaccgtccattgaaataatctcnnnnnnnnnnnnnnnttgttatcatga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
41649733 |
aaaaaatgttatatctaataaaaacaaatgatttgtaaataaagacacaggtaccgtcaattgaaataatctcaaaaaaaaatataatttgttatcatga |
41649634 |
T |
|
| Q |
107 |
tatttgtacgaagcttcaacaaccatttatcaataattaatatttgtagaagaatgaaaatttcattcaaatttttccatacacatgaatgaatctaaac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41649633 |
tatttgtacgaagcttcaacaaccatttatcaataattaatatttgtagaagaatgaaaatttcattcaaatttttccatacacatgaatgaatctaaac |
41649534 |
T |
|
| Q |
207 |
tctaaccaattggtaaaga |
225 |
Q |
| |
|
|||||||| ||| |||||| |
|
|
| T |
41649533 |
tctaaccacttgataaaga |
41649515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University