View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10199_low_13 (Length: 250)
Name: NF10199_low_13
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 41649717 - 41649898
Alignment:
| Q |
1 |
tagatataacattttttagaaaaatttggtactaccaccaatcctactagctactaccacctgc--tactgtccactgcttaaatatagtaacatctagt |
98 |
Q |
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| T |
41649717 |
tagatataacatttttttttaaaatttggtactaccaccaatcctactagctactaccacctgcgctactgtccactgcttatatatagtaacatctagt |
41649816 |
T |
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| Q |
99 |
gagcaatgaatatgcgttgttccatttgatttaacttcttttctttcttttccatttcccaccttaacactttgaatgcatg |
180 |
Q |
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| T |
41649817 |
gagcaatgaatatgcgttgttccatttgatttaacttcttttttttcttttccatttcccaccttaacactttgaatgcatg |
41649898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 43228404 - 43228260
Alignment:
| Q |
35 |
ccaccaatcctactag-ctactaccacctgctactgtccactgcttaaatatagtaaca-tctagtgagcaatgaatatgcgttgttccatttgatttaa |
132 |
Q |
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||||||||||||| || |||||||||| |||||||||||||||| || |||||||||| |||||| ||||||||| ||| ||||||||||| ||||||| |
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| T |
43228404 |
ccaccaatcctaccaggctactaccacttgctactgtccactgcata--tatagtaacaatctagt-agcaatgaacatgtgttgttccattagatttaa |
43228308 |
T |
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| Q |
133 |
cttcttttctttcttttccatttcccaccttaacactttgaatgcatg |
180 |
Q |
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| T |
43228307 |
cttcttttctttcttttccatttctcagttcaacactttgaatgcatg |
43228260 |
T |
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