View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10199_low_14 (Length: 249)
Name: NF10199_low_14
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_low_14 |
 | |
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| [»] chr2 (7 HSPs) |
| |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 20895519 - 20895278
Alignment:
| Q |
11 |
atgaacaagggttgaataaaagaaggtcggaattgtaagcattgcaatatcttgtcaagagggatgatcatcaatctagtccatgactcagcaactccat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
20895519 |
atgaacaagggttgaataaaagaaggtcggaattgtaagcattgcaatatcttgtcaagagggatcatcatcaatctagtccatgactcagcaactccat |
20895420 |
T |
|
| Q |
111 |
attttttcattaaccaaaaatcccaatgagtattattggagtcaaaacatacacaaagacagttactcaaaacacccaccacacgat---tgcggacatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
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|
| T |
20895419 |
attttttcattaaccaaaaatcccaatgagtattattggagtcaaaacatacacaaagacagttactcaaaacacccagcacacggttgctgcggacatt |
20895320 |
T |
|
| Q |
208 |
gacaccatcaggttcaggcagcaacacttccttataagtctc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20895319 |
gacaccatcaggttcaggcagcaacacttccttataagtctc |
20895278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 20585183 - 20585424
Alignment:
| Q |
11 |
atgaacaagggttgaataaaagaaggtcggaattgtaagcattgcaatatcttgtcaagagggatgatcatcaatctagtccatgactcagcaactccat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
20585183 |
atgaacaagggttgaataaaagaaggtcggaattgtaagcattgcaatatcttgtcaagagggatcatcatcaatctagtccatgactcagcaactccat |
20585282 |
T |
|
| Q |
111 |
attttttcattaaccaaaaatcccaatgagtattattggagtcaaaacatacacaaagacagttactcaaaacacccaccacacgat---tgcggacatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||| | |||||||||| |
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|
| T |
20585283 |
attttttcattaaccaaaaatcccaatgagtattattggactcaaaacatacacaaagacagttactcaacacatccagcacacagttgctgcggacatt |
20585382 |
T |
|
| Q |
208 |
gacaccatcaggttcaggcagcaacacttccttataagtctc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20585383 |
gacaccatcaggttcaggcagcaacacttccttataagtctc |
20585424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 20596036 - 20596274
Alignment:
| Q |
11 |
atgaacaagggttgaataaaagaaggtcggaattgtaagcattgcaatatcttgtcaagagggatgatcatcaatctagtccatgactcagcaactccat |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
20596036 |
atgaacaagggtcgaataaaagaaggtcggaattgtaagcattgcaatatcttgtcaagagggatcatcatcaatctagtccatgactcagcaactccat |
20596135 |
T |
|
| Q |
111 |
attttttcattaaccaaaaatcccaatgagtattattggagtcaaaacatacacaaagacagttactcaaaacacccaccacacgattgcggacattgac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||||||| |
|
|
| T |
20596136 |
attttttcattaaccaaaaatcccaatgagttttattggagacaaaacatacacaaagacagttactcaaaacacccagcacgccgttgcagacattgac |
20596235 |
T |
|
| Q |
211 |
accatcaggttcaggcagcaacacttccttataagtctc |
249 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
20596236 |
accatcaggtttaggcagcaacacttccttacaagtctc |
20596274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 20611337 - 20611575
Alignment:
| Q |
11 |
atgaacaagggttgaataaaagaaggtcggaattgtaagcattgcaatatcttgtcaagagggatgatcatcaatctagtccatgactcagcaactccat |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
20611337 |
atgaacaagggttgaataaaagaaggccgggattgtaagcagtgccatatcttgttaagagggatgatcatcaatctagtccaggactcagcaattccat |
20611436 |
T |
|
| Q |
111 |
attttttcattaaccaaaaatcccaatgagtattattggagtcaaaacatacacaaagacagttactcaaaacacccaccacacgattgcggacattgac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||||| |
|
|
| T |
20611437 |
attttttcattaaccaaaaatcccaatgagtattattggagtcaaaacatacacaaagacagttactcaaaacacccagcacgggcttgctgacattgac |
20611536 |
T |
|
| Q |
211 |
accatcaggttcaggcagcaacacttccttataagtctc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20611537 |
accatcaggttcaggcagcaacacttccttataagtctc |
20611575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 20603510 - 20603748
Alignment:
| Q |
11 |
atgaacaagggttgaataaaagaaggtcggaattgtaagcattgcaatatcttgtcaagagggatgatcatcaatctagtccatgactcagcaactccat |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20603510 |
atgaacaagggttgaataaaatcaggtcgggattgtaagcagtgccatatcttgttaagagggatcatcatcaatctagtccatgactcagcaactccat |
20603609 |
T |
|
| Q |
111 |
attttttcattaaccaaaaatcccaatgagtattattggagtcaaaacatacacaaagacagttactcaaaacacccaccacacgattgcggacattgac |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||| ||| |
|
|
| T |
20603610 |
attttttcattaaccaaaaatccgaatgagttttattggagtcaaaacatacacaaagacagttactcaaaacacccagcacgtggttgctgacatcgac |
20603709 |
T |
|
| Q |
211 |
accatcaggttcaggcagcaacacttccttataagtctc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20603710 |
accatcaggttcaggcagcaacacttccttataagtctc |
20603748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 249
Target Start/End: Original strand, 20578117 - 20578297
Alignment:
| Q |
69 |
gagggatgatcatcaatctagtccatgactcagcaactccatattttttcattaaccaaaaatcccaatgagtattattggagtcaaaacatacacaaag |
168 |
Q |
| |
|
||||||| |||||||| ||||||| || ||||||||||||||| ||||||| ||||| | | || ||||||| || || ||||||||| ||| |||| |
|
|
| T |
20578117 |
gagggatcatcatcaacttagtccaggattcagcaactccatatgttttcatcaaccacagagccaaatgagttttgttctcgtcaaaacacacataaag |
20578216 |
T |
|
| Q |
169 |
acagttactcaaaacacccaccacacgattgcggacattgacaccatcaggttcaggcagcaacacttccttataagtctc |
249 |
Q |
| |
|
|| |||| |||||| || | | || | | |||||||| ||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
20578217 |
acggttatcggaaacacacaacgtaggaatactgacattgataccatcatgttcaggcagcaacaattccttataattctc |
20578297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 20575454 - 20575560
Alignment:
| Q |
69 |
gagggatgatcatcaatctagtccatgactcagcaactccatattttttcattaaccaaaaatcccaatgagtattattggagtcaaaacatacacaaag |
168 |
Q |
| |
|
||||||| |||||||| |||||||| || ||||||| ||||||| ||||||| ||||| || || ||||||| || || ||||||||| ||| |||| |
|
|
| T |
20575454 |
gagggatcatcatcaacctagtccaagattcagcaattccatatattttcatcaaccatgaaaccaaatgagttttgttctcgtcaaaacacacataaag |
20575553 |
T |
|
| Q |
169 |
acagtta |
175 |
Q |
| |
|
||||||| |
|
|
| T |
20575554 |
acagtta |
20575560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 42694465 - 42694348
Alignment:
| Q |
70 |
agggatgatcatcaatctagtccatgactcagcaactccatattttttcattaaccaaaaatcccaatgagtattattggag---tcaaaacatacacaa |
166 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||| ||||| | ||| | | |||||||| | ||||| ||| |||||||| |||||| |
|
|
| T |
42694465 |
agggatgatcatcaatttagtccatgactcagtaactccatattgattcatcatccatacaccccaatgatttttattcgagtgatcaaaacaaacacaa |
42694366 |
T |
|
| Q |
167 |
agacagttactcaaaaca |
184 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
42694365 |
aggcagttactcaaaaca |
42694348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 42700144 - 42700093
Alignment:
| Q |
69 |
gagggatgatcatcaatctagtccatgactcagcaactccatattttttcat |
120 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
42700144 |
gaggaatgaacatcaatttagtccatgactcagcaactccatattgtttcat |
42700093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 44004752 - 44004865
Alignment:
| Q |
69 |
gagggatgatcatcaatctagtccatgactcagcaactccatattttttcattaaccaaaaatcccaatgagtattattggagtcaaaacatacacaaag |
168 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| | |||||| | ||| | | ||||||||| |||| | ||||||| |||||||| |
|
|
| T |
44004752 |
gagggatgatcatcaatttagtccatgactcagcaactccatactctttcatcatccacacagtccaatgagttttat---aatcaaaactcacacaaag |
44004848 |
T |
|
| Q |
169 |
acagttactcaaaacac |
185 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
44004849 |
gcagtcactcaaaacac |
44004865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 23682441 - 23682388
Alignment:
| Q |
69 |
gagggatgatcatcaatctagtccatgactcagcaactccatattttttcatta |
122 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||| | |||||||| |
|
|
| T |
23682441 |
gagggatgatcgtcaatacagtccatgactcagcaactccatactctttcatta |
23682388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 42414938 - 42414881
Alignment:
| Q |
69 |
gagggatgatcatcaatctagtccatgactcagcaactccatattttttcattaacca |
126 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||| | |||||| ||||| |
|
|
| T |
42414938 |
gagggatgatcatcaatttagtccaagactcagtaactccatactgtttcatcaacca |
42414881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 43983351 - 43983408
Alignment:
| Q |
69 |
gagggatgatcatcaatctagtccatgactcagcaactccatattttttcattaacca |
126 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| |||||||||| | |||||| ||||| |
|
|
| T |
43983351 |
gagggatgatcatgaatttagtccatgactcaacaactccatactctttcatcaacca |
43983408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 43986160 - 43986211
Alignment:
| Q |
69 |
gagggatgatcatcaatctagtccatgactcagcaactccatattttttcat |
120 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||||| | |||||| |
|
|
| T |
43986160 |
gagggataatcatcaatttagtccatgactcaacaactccatactctttcat |
43986211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 19567312 - 19567378
Alignment:
| Q |
56 |
aatatcttgtcaagagggatgatcatcaatctagtccatgactcagcaactccatattttttcatta |
122 |
Q |
| |
|
|||| ||| ||| ||| |||||| ||||| ||||||||||||||||||||||||| | |||||||| |
|
|
| T |
19567312 |
aataacttctcatgagagatgattgtcaatatagtccatgactcagcaactccatactctttcatta |
19567378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 41688782 - 41688838
Alignment:
| Q |
70 |
agggatgatcatcaatctagtccatgactcagcaactccatattttttcattaacca |
126 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||| ||| | |||||| ||||| |
|
|
| T |
41688782 |
agggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaacca |
41688838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 44668640 - 44668710
Alignment:
| Q |
71 |
gggatgatcatcaatctagtccatgactcagcaactccatattttttcattaaccaaaaatcccaatgagt |
141 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||||||||| | |||||| | ||| | | |||||||||| |
|
|
| T |
44668640 |
gggatgatcatcagtttagtccatgactcaacaactccatactctttcatcatccacacaacccaatgagt |
44668710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 44687916 - 44687986
Alignment:
| Q |
71 |
gggatgatcatcaatctagtccatgactcagcaactccatattttttcattaaccaaaaatcccaatgagt |
141 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||||||||| | |||||| | ||| | | |||||||||| |
|
|
| T |
44687916 |
gggatgatcatcagtttagtccatgactcaacaactccatactctttcatcatccacacaacccaatgagt |
44687986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 45095418 - 45095467
Alignment:
| Q |
71 |
gggatgatcatcaatctagtccatgactcagcaactccatattttttcat |
120 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||||||||| | |||||| |
|
|
| T |
45095418 |
gggatgatcatcattttagtccatgactcaacaactccatactctttcat |
45095467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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