View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10199_low_15 (Length: 249)
Name: NF10199_low_15
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31159782 - 31159549
Alignment:
| Q |
1 |
aagatggagggcaagtctaacacaagtcgccaatctctctggttgggatatgcgtcataagtaagcaattttctacggattgatggttttacatatgcaa |
100 |
Q |
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| T |
31159782 |
aagatggagggcaagtctaacacaagtcgccaatctctctggttgggatatgcatcataagtaagaaattttctacggattgatggttttacatatgcaa |
31159683 |
T |
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| Q |
101 |
attttaagggtttgacaattaaatttaacaatatatatttgttttcactttcccttttcaaactatagttgagaacaacaattctctaaaaggagaaata |
200 |
Q |
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| T |
31159682 |
attttaagggtttgacaattaaatttaacaatatatatttgttttcactttcccttttcaaactatagttgagaacaacaattctctaaaaggagaaata |
31159583 |
T |
|
| Q |
201 |
aagttgtgttgtcttcgcctgctcacatgctttt |
234 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
31159582 |
aagttttgttgtcttcgcctgctcacatgctttt |
31159549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 31489172 - 31489371
Alignment:
| Q |
1 |
aagatggagggcaagtctaacacaagtcgccaatctctctggttgggatatgcgtcataagtaagcaattttctacggattgatggttttac------at |
94 |
Q |
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| T |
31489172 |
aagatggagggaagctctgacacaagtggggaatatctcaggctgggatcttcgtgataagtaagcaatcttctattaattgattgttttacttttccat |
31489271 |
T |
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| Q |
95 |
atgcaaattttaagggtttgacaattaaatttaacaatatatatttgttttcactttcccttttcaaactatagttgagaacaacaattctctaaaagga |
194 |
Q |
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| T |
31489272 |
aagcaaattttaaggctttgacaattaaattttaccatgtatatttgatttcactttcccttttcaaactaaagtttagcacaacagttctctacaagga |
31489371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 31163416 - 31163374
Alignment:
| Q |
130 |
aatatatatttgttttcactttcccttttcaaactatagttga |
172 |
Q |
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| T |
31163416 |
aatatatatttgatttcactttctcttttcaaactatagttga |
31163374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31162159 - 31162097
Alignment:
| Q |
1 |
aagatggagggcaagtctaacacaagtcgccaatctctctggttgggatatgcgtcataagtaag |
65 |
Q |
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||||||||||| | || |||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
31162159 |
aagatggagggaagctcaaacacaagtcgccaatctct--ggttgggatgtgcgtcataagtaag |
31162097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 31476589 - 31476650
Alignment:
| Q |
3 |
gatggagggcaagtctaacacaagtcgccaatctctctggttgggatatgcgtcataagtaa |
64 |
Q |
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| T |
31476589 |
gatggagggcagctctgacacaagtcgccgatctctctggttgggatctacgtgataagtaa |
31476650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 31020288 - 31020246
Alignment:
| Q |
87 |
ttttacatatgcaaattttaagggtttgacaattaaatttaac |
129 |
Q |
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| T |
31020288 |
ttttacataagcagattttaaggctttgacaattaaatttaac |
31020246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 31030169 - 31030127
Alignment:
| Q |
87 |
ttttacatatgcaaattttaagggtttgacaattaaatttaac |
129 |
Q |
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| T |
31030169 |
ttttacataagcagattttaaggctttgacaattaaatttaac |
31030127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 31034834 - 31034801
Alignment:
| Q |
36 |
tctctggttgggatatgcgtcataagtaagcaat |
69 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
31034834 |
tctctggatgggatatgcgtcataagtaagcaat |
31034801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13608645 - 13608696
Alignment:
| Q |
1 |
aagatggagggcaagtctaacacaagtcgccaatctctctggttgggatatg |
52 |
Q |
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||||||||||| | ||||||||||| |||||||||||||||||||||||| |
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| T |
13608645 |
aagatggaggggagccctaacacaagtagccaatctctctggttgggatatg |
13608696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6473003 - 6472953
Alignment:
| Q |
1 |
aagatggagggcaagtctaacacaagtcgccaatctctctggttgggatat |
51 |
Q |
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||||||||||| | ||||||||||| ||||||||||||||||||||||| |
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| T |
6473003 |
aagatggaggggagccctaacacaagtagccaatctctctggttgggatat |
6472953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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