View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10199_low_2 (Length: 517)
Name: NF10199_low_2
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 25 - 504
Target Start/End: Complemental strand, 39557130 - 39556649
Alignment:
| Q |
25 |
atagttgggttgtatttaattaagttgggagtaatccctgtattctatttttt--agtgtatattttgctattaagaaaaggtaacgagccaataacatg |
122 |
Q |
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| T |
39557130 |
atagttgggttgtatttaattaagttgggagtaatccctgtattctattttttttagtgtatattttgctattaagaaaaggtaacgagccaataacatg |
39557031 |
T |
|
| Q |
123 |
ttgtaataggtcagtttatgagatccaccgtcggaccaagatcatattagagattcatatatagtaataagttttaggttgtgataaaagtaatacacaa |
222 |
Q |
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| T |
39557030 |
ttgtaataggtcagtttatgagatccaccgtcggaccaagatcatattagagattcatatatagtaataagttttaggttgtgataaaagtaatacacaa |
39556931 |
T |
|
| Q |
223 |
gcaagtcgatcctagctagctaacacctcatttgagtcaatatcatcttagtaggcaaagcatagtacataatgagtgataattaaagagattaaattaa |
322 |
Q |
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| T |
39556930 |
gcaagtcgatcctagctagctaacacctcatttgagtcaatatcatcttagtaagcaaagcatagtacataatgagtgataattaaagagattaaattaa |
39556831 |
T |
|
| Q |
323 |
tcaattaccattacttgatatggaaattcaagaaaagtgcatggttgagcttgattcatcatttcccttatttgtgctcttctttttcttcttgtaaggg |
422 |
Q |
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| T |
39556830 |
tcaattaccattacttgatatggaaattcaagaaaagtgcatggttgagcttgattcatcatttcccttatttgtgctcttctttttcttcttgtaaggg |
39556731 |
T |
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| Q |
423 |
atacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcaaaaggattagtctctg |
504 |
Q |
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| T |
39556730 |
atacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcgaaaggattagtctctg |
39556649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 443
Target Start/End: Original strand, 32002004 - 32002047
Alignment:
| Q |
400 |
tcttctttttcttcttgtaagggatacccctagccttagcttga |
443 |
Q |
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| T |
32002004 |
tcttctttttcttcttgtaaggaattcctctagccttagcttga |
32002047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 478
Target Start/End: Complemental strand, 4863408 - 4863330
Alignment:
| Q |
400 |
tcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagc |
478 |
Q |
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| T |
4863408 |
tcttctttttctttgtgtaagggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagc |
4863330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 499
Target Start/End: Complemental strand, 30942248 - 30942143
Alignment:
| Q |
394 |
ttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcaaaagg |
493 |
Q |
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||||||| |||||||||||||| ||||| ||||| ||||||||||||||| |||| |||| ||| ||||| || || ||||| | ||| || |||||||| |
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| T |
30942248 |
ttgtgcttttctttttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaagg |
30942149 |
T |
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| Q |
494 |
attagt |
499 |
Q |
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|||||| |
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| T |
30942148 |
attagt |
30942143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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