View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10199_low_20 (Length: 231)
Name: NF10199_low_20
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 44500726 - 44500924
Alignment:
| Q |
15 |
agagaccatcaatgattttatgttagcaagctctagtatccagctgaatagaaaataaggagagtcttcgctaaatggaactacatgtgcataaatatct |
114 |
Q |
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| T |
44500726 |
agagaccgtcaatgattttatgttagcaagctctagtagccagctgaat-gaaaataaggagagtcttcgctaaatggaactacatgtgcataaatatct |
44500824 |
T |
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| Q |
115 |
acatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggagaacttagatcaatgttgt |
214 |
Q |
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| T |
44500825 |
acatgtttaagagaagaagcattgcttccagaaagattctgataatgactaccagtaaaaacaaacttacaaagacttggagtacttagatcaatgttgt |
44500924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 45910473 - 45910579
Alignment:
| Q |
102 |
tgcataaatatctacatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggagaactt |
201 |
Q |
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| T |
45910473 |
tgcatgaatctctacatgtttaagagaagaaacattgtttgcagagagtttctgaaaaggagtaccggaaaaaacaaacgtacaaagacttggagtacat |
45910572 |
T |
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| Q |
202 |
agatcaa |
208 |
Q |
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| T |
45910573 |
agatcaa |
45910579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 20994274 - 20994386
Alignment:
| Q |
102 |
tgcataaatatctacatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggagaactt |
201 |
Q |
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| T |
20994274 |
tgcatgaatatctacatgtttaagagaagaaatattgctcccaatgattctctgataaggaataccattaaaagtaaacgtacaaagacttggagtacat |
20994373 |
T |
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| Q |
202 |
agatcaatgttgt |
214 |
Q |
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| T |
20994374 |
agctcaatcttgt |
20994386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 132
Target Start/End: Original strand, 2995864 - 2995894
Alignment:
| Q |
102 |
tgcataaatatctacatgtttaagagaagaa |
132 |
Q |
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| T |
2995864 |
tgcataaatatctacatgtttaagagaagaa |
2995894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 3978822 - 3978715
Alignment:
| Q |
102 |
tgcataaatatctacatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggagaactt |
201 |
Q |
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||||| ||||||||||||||||||||||||| | |||| ||||| || || ||||| || | || |||||||||||||| ||||||||||||| || | |
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| T |
3978822 |
tgcatcaatatctacatgtttaagagaagaaatactgctcccagatagactcagataaggagtaccggtaaaaacaaacttccaaagacttggagtacat |
3978723 |
T |
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| Q |
202 |
agatcaat |
209 |
Q |
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| T |
3978722 |
aaatcaat |
3978715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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