View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10199_low_22 (Length: 229)

Name: NF10199_low_22
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10199_low_22
NF10199_low_22
[»] chr1 (2 HSPs)
chr1 (115-229)||(36632418-36632532)
chr1 (7-87)||(36632337-36632417)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 36632418 - 36632532
Alignment:
Q  115 caaacaaactcacgagaagcccatacaaataaaactaaatatcttaatgcgtcttttcgtttgacattaattattatctatgcattgtggctcatgtgtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36632418 caaacaaactcacgagaagcccatacaaataaaactaaatatcttaatgcgtcttttcgtttgacattaattattatctatgcattgtggctcatgtgtt 36632517  T
Q  215 aacaaaattaataat 229  Q
    |||||||||||||||    
T  36632518 aacaaaattaataat 36632532  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 36632337 - 36632417
Alignment:
Q  7 tgtttcactcgcttcaaaagaacctattaacaattcatgaatccatttttgcattgtctccatttgaaattttttgctact 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36632337 tgtttcactcgcttcaaaagaacctattaacaattcatgaatccatttttgcattgtctccatttgaaattttttgctact 36632417  T

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