View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10199_low_24 (Length: 202)
Name: NF10199_low_24
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 8177406 - 8177233
Alignment:
| Q |
13 |
gagatgaaagagtaattgaggatactcgattggaaacttgtaattcaaagaaagaaggtttggatttcataaaaaatgaatgcatttacccaatccgcca |
112 |
Q |
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| T |
8177406 |
gagatgaaagagtaattgaggatactcgattggaaacttgtaattcaaagaaagaagctttggatttcataaaaaatgaatgcatttacccaatccgcca |
8177307 |
T |
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| Q |
113 |
atcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgctaatgatgagaagtataaag |
186 |
Q |
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| T |
8177306 |
atcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgctaatgatgagaaatataaag |
8177233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 8169756 - 8169682
Alignment:
| Q |
76 |
atttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggttt |
150 |
Q |
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| T |
8169756 |
atttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgttt |
8169682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 8172392 - 8172313
Alignment:
| Q |
71 |
tttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggttt |
150 |
Q |
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| T |
8172392 |
tttgaatttcataaagaaagattgtatttacccattccaacaatcaatatgtcttgatgatcactctattggaattgttt |
8172313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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