View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10199_low_3 (Length: 452)
Name: NF10199_low_3
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 8754616 - 8754311
Alignment:
| Q |
1 |
aattaagttggttttaacagttcggttcacacagtattggtttggtttttatgagtttagttcaggttcatgaactgtgtttgaattaatagttcagttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8754616 |
aattaagttggttttaacagttcggttcacacagtattggtttggtttttatgagtttagttcaggttcatgaactgtgtttgaattaatagttcagttc |
8754517 |
T |
|
| Q |
101 |
ttgaaccaacattaacagttcggtttttatcagttcggttcagttctacaatttggtttgatttttcagnnnnnnnnaacacccctactttttatagtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8754516 |
ttgaaccaacattaacagttcggtttttatcagttcggttcagttctacagtttggtttgatttttcagtttttttgaacacccctactttttatagtat |
8754417 |
T |
|
| Q |
201 |
tttactttgtgtcttgaatgcagtctaattgattctggtcaggactagcctttgtggagttctgaaggtactccttcattttcttacaagttacttcttt |
300 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8754416 |
tttactttgtgtcttgaatgtagtcaaattgattctggtcaggactagcctttgtggagttctgaaggtactccttcattttcttacaagttacttcttt |
8754317 |
T |
|
| Q |
301 |
gtgttc |
306 |
Q |
| |
|
|||||| |
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|
| T |
8754316 |
gtgttc |
8754311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 306 - 437
Target Start/End: Complemental strand, 8753265 - 8753134
Alignment:
| Q |
306 |
ctaaggatgagcaatcatagtacattgataaattattgatgaatacctgtccttagtccttaaactgtcaaagatttctcaaatttcttatggtttagtg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
8753265 |
ctaaggatgagcaatcatagtacattgataaattattgatgaatacctgtccttagtccttaaacggtcaaagatttctcatatttcttatggtttagtg |
8753166 |
T |
|
| Q |
406 |
ttgggtgcaacggttgtattgccagaaggatc |
437 |
Q |
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||||||||||||||||||||| |||||||||| |
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| T |
8753165 |
ttgggtgcaacggttgtattggcagaaggatc |
8753134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 45185010 - 45185176
Alignment:
| Q |
1 |
aattaagttggttttaacagttcggttcacacagtattggtttggtttttatgagtttagttcaggttcatgaactgtgtttgaattaatagttcagttc |
100 |
Q |
| |
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|||||| ||||||| | |||||||||||||||||| |||||| ||||||||| ||||| ||| |||||| |||| |||||||||||||| |||||| ||| |
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| T |
45185010 |
aattaaattggtttaagcagttcggttcacacagttttggttcggtttttat-agtttggttaaggttcgtgaattgtgtttgaattaacagttcaattc |
45185108 |
T |
|
| Q |
101 |
ttgaaccaacattaacagttcggtttttatcagttcggttcagttctacaatttggtttgatttttcag |
169 |
Q |
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||||||||||| ||| |||||| |||||| ||| |||||| ||||||||||| |||||| ||| |||| |
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| T |
45185109 |
atgaaccaacataaacggttcgg-ttttatgagtgcggttcggttctacaattcggtttggtttgtcag |
45185176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 53256227 - 53256291
Alignment:
| Q |
22 |
tcggttcacacagtattggtttggtttttatgagtttagttcaggttcatgaactgtgtttgaat |
86 |
Q |
| |
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|||||||||||| | |||||| ||||||||||| ||| ||||| |||| |||| ||||||||||| |
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| T |
53256227 |
tcggttcacacaattttggttcggtttttatgaatttggttcaagttcgtgaattgtgtttgaat |
53256291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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