View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10199_low_4 (Length: 451)
Name: NF10199_low_4
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 213 - 437
Target Start/End: Complemental strand, 38185067 - 38184843
Alignment:
| Q |
213 |
atggtgttcttttgttttctggtggatcaaactaaggagatgcagaagagcaagccagcagcggggacgtgttcgcggtgcggcggtggtgcaagtgtgg |
312 |
Q |
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| T |
38185067 |
atggtgttcttttgttttctggtggatcaaactaaggagatgcagaagagcaagccagcagcggggacgtgttcacggtgcggcggtggtgcaagtgtgg |
38184968 |
T |
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| Q |
313 |
cggacatgaagacagccacaaggttttgctatgtcccattttatgtgaaatcttggaaagccattgtttgcaccttttgtggagctactcttcgttctta |
412 |
Q |
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| T |
38184967 |
cggacatgaagacagccacaaggttttgctatgtcccattttatgtgaaatcttggaaagccatcgtttgtaccttttgtggagctactcttcgttctta |
38184868 |
T |
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| Q |
413 |
ccatgactaagatactatagttact |
437 |
Q |
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| T |
38184867 |
ccatgactaagatactatagttact |
38184843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 38185269 - 38185101
Alignment:
| Q |
17 |
catcacattcatatcttcattactaagaaagttcatcaacattatgaccctcaactaacttgttgccagcttcactttcaactttatatttatatacaca |
116 |
Q |
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| T |
38185269 |
catcacattcatatcttcattactaagaaagttcatcaacattatgaccctcaactaacttgttgccagcttcactttcaacttaatatttatatacaca |
38185170 |
T |
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| Q |
117 |
catcaccacttctcatatcacaaatcacattttttcaactaataaagtagaaaactacactacattgtg |
185 |
Q |
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| T |
38185169 |
catcaccacttctcatatcacatatcacattttttcaactaataaagtagaaaactacactacattgtg |
38185101 |
T |
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