View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10199_low_6 (Length: 396)
Name: NF10199_low_6
Description: NF10199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10199_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 29282671 - 29282302
Alignment:
| Q |
18 |
atagacataatccactagcttgtttgcatccattgttcctgtcacagttactttccctgtgctaaactctgtcactgctgtttgaactcctacattaatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282671 |
atagacataatccactagcttgtttgcatccattgttcctgtcacagttactttccctgtgctaaactctgtcactgctgtttgaactcctacattaatc |
29282572 |
T |
|
| Q |
118 |
aataatgtttttacattaattaatgcaaataaatatggcattgattgaatattagcacactattttgtccagagcatttgattcatggtcaaatggacat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29282571 |
aataatgtttttacattaattaatgcaaataaatatggcattgattgaatactagtac--tattttgtcaagagcatttgattcatggtcaaatggacat |
29282474 |
T |
|
| Q |
218 |
gaccatggttttaaactatggtccgaaatgcaatataaaggtgtctgtaataacatcgcaaccacaattctgaccataatggtcatattttctcataata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282473 |
gaccatggttttaaactatggtccgaaatgcaatataaaggtgtctgtaataacatcgcaaccacaattctgaccataatggtcatattttctcataata |
29282374 |
T |
|
| Q |
318 |
taacggtttgtggcgtatccacaaccgcggccacagttcaaaacctttctatattattcaggtgctcctttg |
389 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29282373 |
taacggtttgtggcgtatccacaactgcggccacagttcaaaacctttctatattattcaggtgctcttttg |
29282302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 6470321 - 6470455
Alignment:
| Q |
18 |
atagacataatccactagcttgtttgcatccattgttcctgtcacagttactttccctgtgctaaactctgtcactgctgtttgaactcctacattaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6470321 |
atagacataatccactagcttgtttgcatccattgttcctgtcacagttactttccttgtgctaaactctgccactgctgtttgaactcctacattaatc |
6470420 |
T |
|
| Q |
118 |
aata-atgtttttacattaattaatgcaaataaat |
151 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||| |
|
|
| T |
6470421 |
aatacaagtttttacattaattaatgcaaataaat |
6470455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University