View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10200_high_2 (Length: 408)
Name: NF10200_high_2
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10200_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 7892162 - 7891784
Alignment:
| Q |
17 |
aaagaaaagctcatcattaagggctgcattgatgattcttagcagatatgtcttgcccttctcaacctccattgcatatgtatctagaaaaagaaattac |
116 |
Q |
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| T |
7892162 |
aaagaaaagctcatcattaagggctgcattgatgattcttagcagatatgtcttgcccttctcaacctccattgcatatgtatctagaaaaagaaattac |
7892063 |
T |
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| Q |
117 |
aaattttaatgagggaaatttaggaaaacgttctagccataatttagttgaacgagagaaggtaaatctcgcaagtttgaatttacataatttctatctt |
216 |
Q |
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| T |
7892062 |
aaattttaatgagggaaatttaggaaaacgttctagccataatt-agtcgaacgagataaggtaaatctcgcaagtttgaatttacataatttctatctt |
7891964 |
T |
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| Q |
217 |
tgtccattgtcataagttttcttttgcactcacagaaggtcacttataaaaaatgacggaggtagtgcaaacttgggttattgttcttacgtttctcgga |
316 |
Q |
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| T |
7891963 |
tgtccattgtcataagttttcttttgcactcacaaaaggtcacttataaaaaatgacggaggtagtgcaaacttgggttattgttcttacgtttctcgga |
7891864 |
T |
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| Q |
317 |
acaaggaaagagtggtcctggcttcccattgatcgtatgtgcatccgacatatttggtggcaaccccatttggttccctt |
396 |
Q |
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| T |
7891863 |
acaaggaaagagtggtcctggcttcccattgatcgtatgtgcatccgacatatttggtggcaaccccatttggttccctt |
7891784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 7902198 - 7902102
Alignment:
| Q |
300 |
ttcttacgtttctcggaacaaggaaagagtggtcctggcttcccattgatcgtatgtgcatccgacatatttggtggcaaccccatttggttccctt |
396 |
Q |
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| T |
7902198 |
ttcttacgcttctcagaacaaggaaatagtggtcctggttttccattgatcgtatgtgcatctgacatatttggtggcaaccccaatttgttccctt |
7902102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 31214162 - 31214092
Alignment:
| Q |
315 |
gaacaaggaaagagtggtcctggcttcccattgatcgtatgtgcatccgacatatttggtggcaaccccat |
385 |
Q |
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| T |
31214162 |
gaacaaggaaatagcggtcctggttttccattgatcgtatgtgcatctgacatatttggtgacaaccccat |
31214092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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