View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10200_high_5 (Length: 249)
Name: NF10200_high_5
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10200_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30785956 - 30785726
Alignment:
| Q |
1 |
agctcaccaactcctctttctctgtttctggttcgtatactatactatactatacaagtttatattcatgaatcannnnnnnnctcttattcaagtttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
30785956 |
agctcaccaactcctctttctctgtttctggttcgtatactatactatac-----aagtttatattcatgaatcattttttttctcttattcaagtttaa |
30785862 |
T |
|
| Q |
101 |
taattttcactctactactcttcacagggaaccaatccaaaacaaaatcaccaagcatctcagaaactcacattatcattgggtgaatcagtgtctagtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
30785861 |
taattttcactctactactcttcacagggaaccaatccaaaacaaaatcaccaagcatctcagaaactcgcattatcattgggtgaatcagtgtctagtg |
30785762 |
T |
|
| Q |
201 |
cagctctagttgctcttctatctgcttctctcttct |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
30785761 |
cagctctagttgctcttctatctgcttctctcttct |
30785726 |
T |
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