View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10200_low_10 (Length: 340)
Name: NF10200_low_10
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10200_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 18057058 - 18057384
Alignment:
| Q |
1 |
atcactccctaaagaatgatgaataatccctttataatgaagaacagaaacatcgttgctcgagtttatgagtccgtttaagaaaaacatgtaatttgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18057058 |
atcactccctaaagaatgatgaataatccctttataatgaagaacagaaacatcgttggtcgagtttatgagtccgtttaagaaaaacatgtaatttgtc |
18057157 |
T |
|
| Q |
101 |
atgtctgggttgcatctcttgtgacatttctcgaatgcaacgatgttacgaaacacggttcctctatgatcaccaatgtacaatggaggaatagttagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18057158 |
atgtctgggttgcatctcttgtgacatttctcgaatgcaacgatgttacgaaacacggttcctctatgatcaccaatgtacaatggaggaatagttagtt |
18057257 |
T |
|
| Q |
201 |
gctttatcatgactccccannnnnnnccaaagcttatatccaacaattctctattctcacaagctttaattttcacacccccttcttttagttcggttat |
300 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18057258 |
gctttatcataactccccatttttttccaaagcttatatccaacaattctctattctcacaagctttaattttcacacccccttcttttagttcggttat |
18057357 |
T |
|
| Q |
301 |
tgaatgaatcatctcgctctgatgtcc |
327 |
Q |
| |
|
|||||||||||||||||||||| |||| |
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| T |
18057358 |
tgaatgaatcatctcgctctgacgtcc |
18057384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 15727652 - 15727973
Alignment:
| Q |
1 |
atcactccctaaagaatgatgaataatccctttataatgaagaacagaaacatcgtt-gctcgagtttatgagtccgtttaagaaaaacatgtaatttgt |
99 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||| |||||||||| || ||| ||||||||||||| ||||||||||||||||||| |||| |
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| T |
15727652 |
atcacttcctaaagaatgatgaataacccctttataatgaagagcagaaacatcattagct-gagtttatgagtctgtttaagaaaaacatgtaagttgt |
15727750 |
T |
|
| Q |
100 |
catgtctgggttgcatctcttgtgacatttctcgaatgcaacgatgttacgaaacacggttcctctatgatcaccaatgtacaatggaggaatagttagt |
199 |
Q |
| |
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||||||| | |||||||||||||||||||| || |||||||| ||||| ||||| || || ||||| ||||||||||||||||| || |||||||||||| |
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| T |
15727751 |
catgtctagattgcatctcttgtgacatttttcaaatgcaactatgttgcgaaaaacagtacctctgtgatcaccaatgtacaaaggtggaatagttagt |
15727850 |
T |
|
| Q |
200 |
tgctttatcatgactccccannnnnnnccaaagcttatatccaacaattctctattctcacaagctttaattttcacacccccttcttttagttcggtta |
299 |
Q |
| |
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| ||||| ||| | |||||| |||||||||||||||| |||||||||| ||||||| |||||| ||||||||||||||| ||||||||| |||| |
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| T |
15727851 |
tcctttaccataattccccatttttttccaaagcttatatccatcaattctctactctcacatgctttagttttcacaccccctttttttagttctgtta |
15727950 |
T |
|
| Q |
300 |
ttgaatgaatcatctcgctctga |
322 |
Q |
| |
|
||||||||||||||| ||||||| |
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|
| T |
15727951 |
ttgaatgaatcatctggctctga |
15727973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 15733671 - 15733992
Alignment:
| Q |
1 |
atcactccctaaagaatgatgaataatccctttataatgaagaacagaaacatcgtt-gctcgagtttatgagtccgtttaagaaaaacatgtaatttgt |
99 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||| |||||||||| || ||| || |||||||||| ||||||||||||||||||| |||| |
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|
| T |
15733671 |
atcacttcctaaagaatgatgaataacccctttataatgaagagcagaaacatcattagct-gaatttatgagtctgtttaagaaaaacatgtaagttgt |
15733769 |
T |
|
| Q |
100 |
catgtctgggttgcatctcttgtgacatttctcgaatgcaacgatgttacgaaacacggttcctctatgatcaccaatgtacaatggaggaatagttagt |
199 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||||||| ||||| ||||| || || ||||| ||||||||||||||||| || |||||||||||| |
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|
| T |
15733770 |
catgtctggattgcatctcttgtgacatttttcaaatgcaactatgttgcgaaaaacagtacctctgtgatcaccaatgtacaaaggtggaatagttagt |
15733869 |
T |
|
| Q |
200 |
tgctttatcatgactccccannnnnnnccaaagcttatatccaacaattctctattctcacaagctttaattttcacacccccttcttttagttcggtta |
299 |
Q |
| |
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| ||||| ||| | |||||| |||||||||||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||||| |||| |
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| T |
15733870 |
tcctttaccataattccccatttttttccaaagcttatatccatcaactctctactctcgcaggctttaattttcacacccccttcttttagttctgtta |
15733969 |
T |
|
| Q |
300 |
ttgaatgaatcatctcgctctga |
322 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
15733970 |
ttgaatgaatcatctggctctga |
15733992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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