View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10200_low_11 (Length: 332)
Name: NF10200_low_11
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10200_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 6089479 - 6089167
Alignment:
| Q |
17 |
acaacatagtagtacaagtactatgatgttgaataatcatgaacctttgtctttgtcactttcatcaaataaaagtgttagtagtaatttacctttggag |
116 |
Q |
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| T |
6089479 |
acaacatagtagtactagtactatgatgttgaataatcatgaacctttgtctttgtcactttcatcaaataaaagtgttagtagtaatttacctttggag |
6089380 |
T |
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| Q |
117 |
ttgaatctacaaagatatggatctatgatttatggtggtggaggtgtgattcaagggttggttgaaggaggaggaggaagtggtggttcagttccattta |
216 |
Q |
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| T |
6089379 |
ttgaatctacaaagatatggatctatgatttatggtggtggaggtgtgattcaaggtttggttgaaggagg---aggaagtggtggttcagttccattta |
6089283 |
T |
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| Q |
217 |
ctggatatgcttctgttttgaaggattctaggtttttgaaaccagctcaagaattgttggaagagatgtgtgatgttggaaatcttggtgtttgtggtga |
316 |
Q |
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| T |
6089282 |
ctggatatgcttctgttttgaaggattctaggtttttgaaaccagctcaagaattgttggaagagatgtgtgatgttggaaatcttggtgtttgtggtga |
6089183 |
T |
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| Q |
317 |
gaaggttgttgttgtt |
332 |
Q |
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| T |
6089182 |
gaaggttgttgttgtt |
6089167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 23676809 - 23676727
Alignment:
| Q |
213 |
tttactggatatgcttctgttttgaaggattctaggtttttgaaaccagctcaagaattgttggaagagatgtgtgatgttgg |
295 |
Q |
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| T |
23676809 |
tttacgggttatgcttctgttttgaagggatcgaggtttttgaaacctgcacaacaattattggatgagatatgtgatgttgg |
23676727 |
T |
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