View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10200_low_14 (Length: 283)
Name: NF10200_low_14
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10200_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 41905423 - 41905703
Alignment:
| Q |
1 |
tcatatcatcttcgtttccatcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtttttcaaagactgcatcttttataaaaacaaa |
100 |
Q |
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| T |
41905423 |
tcatatcatcttcatctccatcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtttttcaaagacagcatcttttataaaaacaaa |
41905522 |
T |
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| Q |
101 |
gttccctgtagctcctgggacctgtgttgtgcacaccatacaaagaggaataagcattccgtgataaatccgagatttcaaatatttttgccagttaatg |
200 |
Q |
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| T |
41905523 |
gttccctgtagctcctgggacctgtgttgtgcacaccatacaaagaggaataagcattccgtgataaatccgagatttcaaatatttttgccagttaatg |
41905622 |
T |
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| Q |
201 |
aataattgagctactaaattaaatacaaaatggtttcaatccaccatcgttctcttgatgatatattagtcagaatttcttga |
283 |
Q |
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| T |
41905623 |
aataattgagctactaaattaaatacaaaatggtttcaatccaccatcgttctcttgatg--atattagtcagaatttcttga |
41905703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 1310991 - 1311190
Alignment:
| Q |
19 |
catcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtttttcaaagactgcatcttttataaaaacaaagttccctgtagctcctgg |
118 |
Q |
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| T |
1310991 |
catcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtttttcatagactgcatcttttataaaaacaaagttccctgtagctcctgg |
1311090 |
T |
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| Q |
119 |
gacctgtgttgtgcacaccatacaaagaggaataagcattccgtgataaatccgagatttcaaatatttttgccagttaatgaataattgagctactaaa |
218 |
Q |
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| T |
1311091 |
gacctgcattgtgcacatcatacaaagagaaataagcagtcagagataaagatgagattccaaatattgttgccagttaatggataattaagctattaaa |
1311190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 1306490 - 1306544
Alignment:
| Q |
19 |
catcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtttttc |
73 |
Q |
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| T |
1306490 |
catcctctggtacatagtaagttgggaaaggaagtatagatgggtcaggtttttc |
1306544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 38479230 - 38479358
Alignment:
| Q |
19 |
catcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtttttcaaagactgcatcttttataaaaacaaagttccctgtagctcctgg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || |
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| T |
38479230 |
catcttctggcacaaagtaagttgggaaaggaagtatagatgtgtcaggtttttcataaactgcatcttttataaaaacaaagttccctgtagctcccgg |
38479329 |
T |
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| Q |
119 |
gacctgtgttgtgcacaccatacaaagag |
147 |
Q |
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| T |
38479330 |
gacctgcatagtgcacatcatacaaagag |
38479358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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