View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10200_low_17 (Length: 247)
Name: NF10200_low_17
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10200_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9665243 - 9665481
Alignment:
| Q |
1 |
ataccggtcatgtatccacctcaaatctcaccctacctaacacatattacattcctaacttgacacttaatcttatttctgttggtcaattgtgtgaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9665243 |
ataccggtcatgtatccacctcaaatctcaccctgcctgacacatattacattcctaacttgacacttaatcttatttttgttggtcaattgtgtgaaca |
9665342 |
T |
|
| Q |
101 |
aggactgaatgttgatttttcaacatctggtgttcaggtacaggatccacagacgaagcagatcattgggatgggtcacagggtgggttggttatttgag |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
9665343 |
aggactgaatgtttatttttcaacatctggtgttcaggtacaggatccacagacgaagcagatcattgggatgggtcgcagggtgggtcggttatttgag |
9665442 |
T |
|
| Q |
201 |
ctccaatctctccaccttcctaaagatcatatctctgct |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9665443 |
ctccaatctctccaccttcctaaagatcatatctttgct |
9665481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 11350953 - 11351055
Alignment:
| Q |
137 |
ggtacaggatccacagacgaagcagatcattgggatgggtcacagggtgggttggttatttgagctccaatctctccaccttcctaaagatcatatctct |
236 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11350953 |
ggtataggatccacagacgaagcagatcattgggacgggtcgcagggtgggtcggttatttgagctccaatctctccaccttcctaaagatcatatctct |
11351052 |
T |
|
| Q |
237 |
gct |
239 |
Q |
| |
|
||| |
|
|
| T |
11351053 |
gct |
11351055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 12617371 - 12617584
Alignment:
| Q |
7 |
gtcatgtatccacctcaaatctcaccctacctaacacatattacattcctaacttgacacttaatcttatttctgttggtcaattgtgtgaacaaggact |
106 |
Q |
| |
|
||||||||||||||||||| ||||| || ||| ||| |||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12617371 |
gtcatgtatccacctcaaacctcactcttccttacatctattgcatacagaacttgacacttaatcttatttctgttggccaattgtgtgaacaaggaca |
12617470 |
T |
|
| Q |
107 |
gaatgttgatttttcaacatctggtgttcaggtacaggatccacagacgaagcagatcattgggatgggtcacagggtgggttggttatttgagctccaa |
206 |
Q |
| |
|
|||||| ||||||| | || ||||| || |||| ||| ||| ||||| || |||||||||| ||| |||||||||| ||||||||||| ||| |
|
|
| T |
12617471 |
aaatgtttatttttctccttcaggtgtccatgtacttaatctacaaacgaaacatatcattgggacatgtcgcagggtgggtctattatttgagcttcaa |
12617570 |
T |
|
| Q |
207 |
tctctccaccttcc |
220 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
12617571 |
tctcttcatcttcc |
12617584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University