View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10200_low_18 (Length: 243)
Name: NF10200_low_18
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10200_low_18 |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 26852831 - 26853053
Alignment:
| Q |
11 |
gacatcagaagcaatcaggtctaatgaaaggtcggccacttcgaaaacataaatgtgataaggaagtgatgttatgagatggttggggttcaatttcatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26852831 |
gacatcagaagcaatcaggtctaatgaaaggtcggccacttcgaaaacataaatgtgataaggaagtgatgttatgagatggttggggttcaatttcatg |
26852930 |
T |
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| Q |
111 |
attcctccgaatctgttcattctttgggagaattgggatggggtttcgggtgttaaaaagatgcgtaatggctttcggatgatttggcatgcggtggtgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26852931 |
attcctccgaatctgttcattctttgggagaattgggatggggtttcgggtgttaaaaagatgcgtaatggctttcggatgatttggcatgcggtggtat |
26853030 |
T |
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| Q |
211 |
ggagtatatggcatggtagaaac |
233 |
Q |
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||||||||||||||| ||||||| |
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| T |
26853031 |
ggagtatatggcatgctagaaac |
26853053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 26627652 - 26627692
Alignment:
| Q |
11 |
gacatcagaagcaatcaggtctaatgaaaggtcggccactt |
51 |
Q |
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| T |
26627652 |
gacatcagaagcaatcgggtctaatgaaaggttggccactt |
26627692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 26733629 - 26733669
Alignment:
| Q |
11 |
gacatcagaagcaatcaggtctaatgaaaggtcggccactt |
51 |
Q |
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| T |
26733629 |
gacatcagaagcaatcgggtctaatgaaaggttggccactt |
26733669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 27702806 - 27702766
Alignment:
| Q |
11 |
gacatcagaagcaatcaggtctaatgaaaggtcggccactt |
51 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
27702806 |
gacatcagaagcaatcaggtctaatgaaaggttagccactt |
27702766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 27714392 - 27714352
Alignment:
| Q |
11 |
gacatcagaagcaatcaggtctaatgaaaggtcggccactt |
51 |
Q |
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||||||||||| |||| ||||||||||||||| |||||||| |
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| T |
27714392 |
gacatcagaaggaatcgggtctaatgaaaggttggccactt |
27714352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 10509093 - 10509228
Alignment:
| Q |
79 |
atgttatgagatggttggggttcaatttcatgattcctccgaatctgttcattctttgggagaattgggatggggtttcgggtgttaaaaagatgcgtaa |
178 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||||||||| | | ||| || |||||||||||||| |
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| T |
10509093 |
atgttatgagatggttggcattcaatttcatgattcctctgaatttgttcattctatgggaaaattgggatggtgctgcggttggaaaaaagatgcgtaa |
10509192 |
T |
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| Q |
179 |
tggctttcggatgatttggcatgcggtggtgtggag |
214 |
Q |
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||||||||| ||||||||||||||||| |||||||| |
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| T |
10509193 |
tggctttcgaatgatttggcatgcggtagtgtggag |
10509228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 7306594 - 7306695
Alignment:
| Q |
124 |
tgttcattctttgggagaattgggatggggtttcgggtgttaaaaagatgcgtaatggctttcggatgatttggcatgcggtggtgtggagtatatggca |
223 |
Q |
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||||||| || ||||| |||||||| || ||||||| || ||||| ||||||||||| ||| || |||||||||||||||||| ||||| || ||||| |
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| T |
7306594 |
tgttcatcctatgggaaaattgggaaggtgtttcggcggtcaaaaaaatgcgtaatggatttaggtcgatttggcatgcggtggtttggagcatttggca |
7306693 |
T |
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| Q |
224 |
tg |
225 |
Q |
| |
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|| |
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| T |
7306694 |
tg |
7306695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 20040504 - 20040447
Alignment:
| Q |
165 |
aaaaagatgcgtaatggctttcggatgatttggcatgcggtggtgtggagtatatggc |
222 |
Q |
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|||||||| |||| || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
20040504 |
aaaaagatttgtaacggttttcggatgatttggcatgcggtggtgtggagtatttggc |
20040447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 17552 - 17592
Alignment:
| Q |
11 |
gacatcagaagcaatcaggtctaatgaaaggtcggccactt |
51 |
Q |
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||||||||||| |||| ||||||||||||||| |||||||| |
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| T |
17552 |
gacatcagaaggaatcgggtctaatgaaaggttggccactt |
17592 |
T |
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