View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10200_low_2 (Length: 646)

Name: NF10200_low_2
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10200_low_2
NF10200_low_2
[»] chr6 (15 HSPs)
chr6 (19-646)||(26853098-26853737)
chr6 (42-196)||(27702389-27702545)
chr6 (22-190)||(26627957-26628127)
chr6 (22-190)||(26733934-26734104)
chr6 (42-200)||(26828300-26828461)
chr6 (77-188)||(27652346-27652458)
chr6 (42-134)||(26966105-26966199)
chr6 (42-188)||(26640621-26640769)
chr6 (42-188)||(26746587-26746735)
chr6 (42-134)||(27422543-27422637)
chr6 (42-140)||(27714156-27714256)
chr6 (42-200)||(26890000-26890160)
chr6 (52-200)||(31291311-31291461)
chr6 (42-130)||(26651115-26651205)
chr6 (42-130)||(26757083-26757173)
[»] chr8 (2 HSPs)
chr8 (389-623)||(10509314-10509554)
chr8 (42-140)||(29270049-29270149)
[»] chr4 (5 HSPs)
chr4 (488-624)||(7306770-7306907)
chr4 (110-146)||(18692521-18692557)
chr4 (110-146)||(18719020-18719056)
chr4 (110-145)||(18674450-18674485)
chr4 (302-369)||(33580363-33580430)
[»] chr5 (1 HSPs)
chr5 (274-369)||(35025144-35025239)
[»] scaffold0003 (1 HSPs)
scaffold0003 (42-134)||(64726-64820)
[»] scaffold0349 (1 HSPs)
scaffold0349 (42-140)||(17688-17788)
[»] chr7 (2 HSPs)
chr7 (274-369)||(16666769-16666865)
chr7 (274-369)||(17641139-17641235)
[»] chr3 (1 HSPs)
chr3 (541-594)||(26697778-26697831)


Alignment Details
Target: chr6 (Bit Score: 494; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 19 - 646
Target Start/End: Complemental strand, 26853737 - 26853098
Alignment:
Q  19 tgcgcaacccctagatatcttgaatgacagtgcaaatagccagatgaccacagatggatcctgacaatgcacggtcaaagaacaagtaattcttagtttt 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26853737 tgcgcaacccctagatatcttgaatgacaatgcaaatagccagatgaccacagatggatactgacaatgcacggtcaaagaacaagtaattcttagtttt 26853638  T
Q  119 ggttagagaaaagttgtgtaaactaccgtcaacaggctgaaatcgtcgggaatggattctccattttcaactttatgagagataannnnnnnaaaaaggg 218  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||       ||||||||    
T  26853637 ggttagagaaaagttatgtaaactaccgtcaacaggctgaaatcgttgggaatggattctccattttcaactttatgagagagaatttttttaaaaaggg 26853538  T
Q  219 gatagggagatcgaagaagagaagttagaaacatcacttccttatcnnnnnnnnnaaatcagcaaattttattgagatcgagagtgtacaggacgcacaa 318  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  26853537 gatagggagattgaagaagagaagttagaaacatcacttccttatcttttttttgaaatcagcaaattttattgagatcgagagtgtacaggacgcacaa 26853438  T
Q  319 caaactcaagaggcaaacatatacaattgtctccgacataccggaaaacaaaccccaaaacagnnnnnnn------------ctgctatgacagcaggaa 406  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||    
T  26853437 caaactcgagaggcaaacatatacaattgtctccgacataccggaaaacaaaccccaaaacagatcccaaaacagaaaaaaactgctatgacagcaggaa 26853338  T
Q  407 acccagccgcagcaccctgttgcaaaaacacagaaaattgatgctgctatatgcgtactgacagcattctacagctgcagacaccgtatacctcagcctc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26853337 acccagccgcagcaccctgttgcaaaaacacagaaaattgatgctgctatatgcgtactgacagcattctacagctgcagacaccgtatacctcagcctc 26853238  T
Q  507 aacctcgcactgcaaacagaaatgacacccttttccgcaacagacactcctttgggttccaatgccattcatagaacatacaagccggagaattggaccg 606  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26853237 aacctcgcaatgcaaacagaaatgacaccctttaccgcaacagacactcctttgggttccaatgccattcatagaacatacaagccggagaattggaccg 26853138  T
Q  607 gtccaaatgccatctccaagataagaccttgatgtcgtcc 646  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26853137 gtccaaatgccatctccaagataagaccttgatgtcgtcc 26853098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 27702389 - 27702545
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagtaatt-cttagttttggttagagaaaagttgtgtaa 139  Q
    |||||| |||||||||||||||||| |||  | | | |||||||||| || |||||| |||||| || | ||||||||||||||||||||||||| ||||    
T  27702389 atgacaatgcaaatagccagatgactacatgtcgtttcctgacaatgtacagtcaaaaaacaagaaaatacttagttttggttagagaaaagttgcgtaa 27702488  T
Q  140 actaccgtcaacaggctgaaatcgtcgggaatggattctccattttcaactttatga 196  Q
    | ||| | ||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  27702489 attacagacaacaggctgaaatcatcgggaatggattctccatgttcaactttatga 27702545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 26628127 - 26627957
Alignment:
Q  22 gcaacccctagatatcttgaatgacagtgcaaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagtaatt-cttagttttg 119  Q
    |||||| ||||| |||||| |||||| |||| | ||||||||||| | |  ||| | |||||||||| || ||||||||||||  || | ||||||||||    
T  26628127 gcaacctctagacatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttg 26628028  T
Q  120 gttagagaaaagttgtgtaaactaccgtcaacaggctgaaatcgtcgggaatggattctccattttcaact 190  Q
    ||||||||||||||| ||||| ||||| | ||||||||||||| ||||||||||||||| ||| |||||||    
T  26628027 gttagagaaaagttgcgtaaattaccgacgacaggctgaaatcatcgggaatggattcttcatgttcaact 26627957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 26734104 - 26733934
Alignment:
Q  22 gcaacccctagatatcttgaatgacagtgcaaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagtaatt-cttagttttg 119  Q
    |||||| ||||| |||||| |||||| |||| | ||||||||||| | |  ||| | |||||||||| || ||||||||||||  || | ||||||||||    
T  26734104 gcaacctctagacatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttg 26734005  T
Q  120 gttagagaaaagttgtgtaaactaccgtcaacaggctgaaatcgtcgggaatggattctccattttcaact 190  Q
    ||||||||||||||| ||||| ||||| | ||||||||||||| ||||||||||||||| ||| |||||||    
T  26734004 gttagagaaaagttgcgtaaattaccgacgacaggctgaaatcatcgggaatggattcttcatgttcaact 26733934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 26828461 - 26828300
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatgga-tcctgacaatgcacggtcaaagaacaagtaatt-cttagttttggttagagaaaagttgtgtaa 139  Q
    |||||| ||| ||||||||||| || ||||||||| ||||||||||| || |||||| |||||| || | ||||||||||| |||||||||||| |||||    
T  26828461 atgacaatgcgaatagccagatcactacagatggactcctgacaatgtacagtcaaaaaacaagaaaatgcttagttttggatagagaaaagttctgtaa 26828362  T
Q  140 actaccgtcaacaggc-tgaaatcgtcgggaatggattctccattttcaactttatgagaga 200  Q
    | ||| | |||| ||| |||||||  |||||||||||| ||||| |||||  ||||||||||    
T  26828361 attactgacaactggcttgaaatcaacgggaatggattttccatgttcaatgttatgagaga 26828300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 27652346 - 27652458
Alignment:
Q  77 tcctgacaatgcacggtcaaagaacaagtaatt-cttagttttggttagagaaaagttgtgtaaactaccgtcaacaggctgaaatcgtcgggaatggat 175  Q
    ||||||||||| |  ||||| |||||||||| | ||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||| ||||| ||||    
T  27652346 tcctgacaatgtaaagtcaatgaacaagtaaatgcttagttttggttagagaaaagttgcgtatattaccggcaacaggctgaaatcgttgggaaaggat 27652445  T
Q  176 tctccattttcaa 188  Q
    |||| || |||||    
T  27652446 tctctatgttcaa 27652458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 26966199 - 26966105
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatgg-atcctgacaatgcacggtcaaagaacaagt-aattcttagttttggttagagaaaagttg 134  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||| || |||||||||||||| ||  ||||||||||||| |||||||||||    
T  26966199 atgacagtgcaaatagccagatgactacagatggtgtcctgacaatgtacagtcaaagaacaagtaaaagcttagttttggtttgagaaaagttg 26966105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 26640769 - 26640621
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagtaatt-cttagttttggttagagaaaagttgtgtaa 139  Q
    |||||| ||| ||||||||||| || |||||||| | |||||||||| || |||||||||| ||||| | ||||||||||| |||||||||| |  ||||    
T  26640769 atgacaatgcgaatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaagctccgtaa 26640670  T
Q  140 actaccgtcaacaggctgaaatcgtcgggaatggattctccattttcaa 188  Q
    | || || ||||| |||||||| | ||||||||||||||| || |||||    
T  26640669 attatcgacaacaagctgaaattgacgggaatggattctctatgttcaa 26640621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 26746735 - 26746587
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagtaatt-cttagttttggttagagaaaagttgtgtaa 139  Q
    |||||| ||| ||||||||||| || |||||||| | |||||||||| || |||||||||| ||||| | ||||||||||| |||||||||| |  ||||    
T  26746735 atgacaatgcgaatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaagctccgtaa 26746636  T
Q  140 actaccgtcaacaggctgaaatcgtcgggaatggattctccattttcaa 188  Q
    | || || ||||| |||||||| | ||||||||||||||| || |||||    
T  26746635 attatcgacaacaagctgaaattgacgggaatggattctctatgttcaa 26746587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 27422543 - 27422637
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatgg-atcctgacaatgcacggtcaaagaacaagt-aattcttagttttggttagagaaaagttg 134  Q
    |||||| |||||||||||||||||| ||||||||  ||||||||||| || | |||||||||||| ||| ||||||||| |||||||||||||||    
T  27422543 atgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttcgttagagaaaagttg 27422637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 27714156 - 27714256
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagtaatt-cttagttttggttagagaaaagttgtgtaa 139  Q
    |||||| |||||||||||||||||| |||  ||| | |||||||||| || ||||||||||||| || | ||||||||||||||||||||||||| ||||    
T  27714156 atgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaa 27714255  T
Q  140 a 140  Q
    |    
T  27714256 a 27714256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 26890160 - 26890000
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagtaattctt-agttttggttagagaaaagttgtgtaa 139  Q
    ||||||||  ||||||||||||||| |||||| | | |||||||||| || |||||| || || ||| | || |||||||||||||||||||||||| ||    
T  26890160 atgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgtgcaa 26890061  T
Q  140 actaccgtcaacaggctgaaatcgtcgggaatggattctccattttcaactttatgagaga 200  Q
    |  |||  |||||||||||| || |||| | | |||||| ||| || || |||||||||||    
T  26890060 ataaccaacaacaggctgaattcatcggcacttgattcttcatgtttaattttatgagaga 26890000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 31291461 - 31291311
Alignment:
Q  52 aaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagtaatt-cttagttttggttagagaaaagttgtgtaaactaccgtca 149  Q
    ||||||||||||||  |||||||| | |||| |||| |||  || ||||||||| || | ||||||||| ||||||||||||||| ||||| ||||| |     
T  31291461 aaatagccagatgattacagatggtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgact 31291362  T
Q  150 acaggctgaaatcgtcgggaatggattctccattttcaactttatgagaga 200  Q
    |||||||||| || ||  ||||| ||||| ||| ||||| |||||| ||||    
T  31291361 acaggctgaattcatcaagaatgcattcttcatgttcaattttatgggaga 31291311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 26651205 - 26651115
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagt-aattcttagttttggttagagaaaa 130  Q
    |||||| |||| |||| ||| |||| |||||||| | |||||||||| || | |||||||||||| ||||| |||||||||||| ||||||    
T  26651205 atgacaatgcacatagacaggtgactacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaa 26651115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 26757173 - 26757083
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagt-aattcttagttttggttagagaaaa 130  Q
    |||||| |||| |||| ||| |||| |||||||| | |||||||||| || | |||||||||||| ||||| |||||||||||| ||||||    
T  26757173 atgacaatgcacatagacaggtgactacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaa 26757083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 389 - 623
Target Start/End: Complemental strand, 10509554 - 10509314
Alignment:
Q  389 ctgctatgacagcaggaaacccagccgcagcaccctgttgcaaaaacacagaaaattgatgctgctatatgcgtactgacagcattctaca------gct 482  Q
    ||||||||||||||| || | ||||| ||||||||||| ||| || ||||||||  |||||||||||||||||||||||||||| || |||      |||    
T  10509554 ctgctatgacagcagaaatctcagccacagcaccctgtagcagaagcacagaaacctgatgctgctatatgcgtactgacagcagtcaacaatggcagct 10509455  T
Q  483 gcagacaccgtatacctcagcctcaacctcgcactgcaaacagaaatgacacccttttccgcaacagacactcctttgggttccaatgccattcatagaa 582  Q
    || |||||||||||||||||||||||||||||| ||||||||||| ||||| |  || |||||||| ||| |||||||| ||||||||||||||||||||    
T  10509454 gcggacaccgtatacctcagcctcaacctcgcaatgcaaacagaagtgacaactattaccgcaacaaacagtcctttggattccaatgccattcatagaa 10509355  T
Q  583 catacaagccggagaattggaccggtccaaatgccatctcc 623  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  10509354 catacaagccggagaattggaccggtccaactgccatctcc 10509314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 29270049 - 29270149
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagtaatt-cttagttttggttagagaaaagttgtgtaa 139  Q
    |||||| |||||||||||||||||| |||  ||| | |||||||||| || ||||||||||||| || | ||||||||||||||||||||||||| ||||    
T  29270049 atgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaa 29270148  T
Q  140 a 140  Q
    |    
T  29270149 a 29270149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 488 - 624
Target Start/End: Complemental strand, 7306907 - 7306770
Alignment:
Q  488 caccgtatacctcagcctcaacctcgcactgca-aacagaaatgacacccttttccgcaacagacactcctttgggttccaatgccattcatagaacata 586  Q
    |||||||||||||||| ||| ||||||| |||| ||||||| ||| | || ||  ||||||| |||||||||||| |||||||||||||||||  |||||    
T  7306907 caccgtatacctcagcgtcagcctcgcaatgcagaacagaagtgaaaaccattaacgcaacatacactcctttggattccaatgccattcataatacata 7306808  T
Q  587 caagccggagaattggaccggtccaaatgccatctcca 624  Q
    |||||| |||||||||| || |||| ||||||||||||    
T  7306807 caagcctgagaattggaacgatccatatgccatctcca 7306770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 18692521 - 18692557
Alignment:
Q  110 cttagttttggttagagaaaagttgtgtaaactaccg 146  Q
    ||||||||||||||||||||||||||||||| |||||    
T  18692521 cttagttttggttagagaaaagttgtgtaaattaccg 18692557  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 18719020 - 18719056
Alignment:
Q  110 cttagttttggttagagaaaagttgtgtaaactaccg 146  Q
    ||||||||||||||||||||||||||||||| |||||    
T  18719020 cttagttttggttagagaaaagttgtgtaaattaccg 18719056  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 18674450 - 18674485
Alignment:
Q  110 cttagttttggttagagaaaagttgtgtaaactacc 145  Q
    ||||||||||||||||||||||||||||||| ||||    
T  18674450 cttagttttggttagagaaaagttgtgtaaattacc 18674485  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 369
Target Start/End: Original strand, 33580363 - 33580430
Alignment:
Q  302 gtgtacaggacgcacaacaaactcaagaggcaaacatatacaattgtctccgacataccggaaaacaa 369  Q
    ||||||| || ||||||||||||| ||||   |||| ||||||  |||||||||||||||||||||||    
T  33580363 gtgtacaagaagcacaacaaactcgagagcataacaaatacaagcgtctccgacataccggaaaacaa 33580430  T

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Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 35025144 - 35025239
Alignment:
Q  274 aaatcagcaaattttattgagatcgagagtgtacaggacgcacaacaaactcaagaggcaaacatatacaattgtctccgacataccggaaaacaa 369  Q
    ||||||||||| |||||||| |||||||||||||| | |||||||||||||| ||||   |||| |||||| ||||||||||||||||||||||||    
T  35025144 aaatcagcaaaatttattgaaatcgagagtgtacaaggcgcacaacaaactcgagagcataacaaatacaaatgtctccgacataccggaaaacaa 35025239  T

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Target: scaffold0003 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 64820 - 64726
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatgg-atcctgacaatgcacggtcaaagaacaagt-aattcttagttttggttagagaaaagttg 134  Q
    |||||| |||||||||||||||||| ||||||||  ||||||||||| || | |||||||||||| ||| ||||||||| |||||||||||||||    
T  64820 atgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttcgttagagaaaagttg 64726  T

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Target: scaffold0349 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 17788 - 17688
Alignment:
Q  42 atgacagtgcaaatagccagatgaccacagatggat-cctgacaatgcacggtcaaagaacaagtaatt-cttagttttggttagagaaaagttgtgtaa 139  Q
    |||||| |||||||||||||||||| |||  ||| | |||||||||| || ||||||||||||| || | ||||||||||||||||||||||||| ||||    
T  17788 atgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaa 17689  T
Q  140 a 140  Q
    |    
T  17688 a 17688  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 16666865 - 16666769
Alignment:
Q  274 aaatcagcaaattttattgagatcgagagtgtacaggacgcacaacaaactcaagaggcaaacat--atacaattgtctccgacataccggaaaacaa 369  Q
    |||||||||||||||||||| | |||||||||||| |||||||| ||||||   | || ||||||  ||||||||||||| |||||||||||||||||    
T  16666865 aaatcagcaaattttattgaaaacgagagtgtacaagacgcacagcaaact-tgggggaaaacataaatacaattgtctctgacataccggaaaacaa 16666769  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 17641235 - 17641139
Alignment:
Q  274 aaatcagcaaattttattgagatcgagagtgtacaggacgcacaacaaactcaagaggcaaacat--atacaattgtctccgacataccggaaaacaa 369  Q
    |||||||||||||||||||| | |||||||||||| |||||||| ||||||   | || ||||||  ||||||||||||| |||||||||||||||||    
T  17641235 aaatcagcaaattttattgaaaacgagagtgtacaagacgcacagcaaact-tgggggaaaacataaatacaattgtctctgacataccggaaaacaa 17641139  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 594
Target Start/End: Original strand, 26697778 - 26697831
Alignment:
Q  541 ccgcaacagacactcctttgggttccaatgccattcatagaacatacaagccgg 594  Q
    |||||| |||||||| ||||||||||||| |||||| || |||| |||||||||    
T  26697778 ccgcaaaagacactcttttgggttccaattccattcgtaaaacaaacaagccgg 26697831  T

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