View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10200_low_22 (Length: 214)
Name: NF10200_low_22
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10200_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 21202184 - 21202377
Alignment:
| Q |
1 |
attataaaaagtcatttttatctttttatagtcatttttatttccattctaatcccatccatagtgaaaaatattttgtctaaataaagaattcttcaat |
100 |
Q |
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| T |
21202184 |
attataaaaagtcatttttatctttttatagtcatttttatttccattctaatcccatccacagtgaaaaataatttgtctaaataaagaattcttcaat |
21202283 |
T |
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| Q |
101 |
tgtttcataccttaaagaatattgaccaattatttttagggaaacnnnnnnnaaaattaggtcacttattatttattagtacaataaaaattta |
194 |
Q |
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| T |
21202284 |
tgtttcataccttaaagaatattgaccaattatttttagggaaactttttttaaaattaggtcacttattatttattagtacaataaaaattta |
21202377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 27259327 - 27259517
Alignment:
| Q |
1 |
attataaaaagtcatttttatctttttatagtcatttttatttccattctaatcccatccatagtgaaaaatattttgtctaaataaagaattcttcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
27259327 |
attataaaaagtcatttttatctttttatagtcatttt-atttccattctaatcccatccacagtgaaaaataatt-gtctaaataaagaattcttcaat |
27259424 |
T |
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| Q |
101 |
tgtttcataccttaaagaatattgaccaattatttttagggaaac-nnnnnnnaaaattaggtcacttattatttattagtacaataaaaatt |
192 |
Q |
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| T |
27259425 |
tgtttcataccttaaagaatattgaccagttatttttagggaaacttttttttaaaattaggtcacttattatttattagtacaataaaaatt |
27259517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 192
Target Start/End: Original strand, 32683730 - 32683760
Alignment:
| Q |
162 |
tcacttattatttattagtacaataaaaatt |
192 |
Q |
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| T |
32683730 |
tcacttattatttattagtacaataaaaatt |
32683760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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