View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10200_low_23 (Length: 203)
Name: NF10200_low_23
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10200_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 12505053 - 12505221
Alignment:
| Q |
19 |
agcttccactaaaagaaatcccaggaacctatggcctccctttcatcggaccgattttggaccgacatgactttttctacaacaaaggcagagacaaatt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
12505053 |
agcttccactaaaagaaatcccaggaacctatggcctccctttcatcggaccgattttggaccgacatgactttttctataaccaaggcagagacaaatt |
12505152 |
T |
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| Q |
119 |
cttctcaactagaattcaaaaatacaattcaacagtcttcaaaaccaacatgccaccaggtccattcat |
187 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12505153 |
cttctcaacaagaatacaaaaatacaattcaacagtcttcaaaaccaacatgccaccaggtccattcat |
12505221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 12490508 - 12490676
Alignment:
| Q |
19 |
agcttccactaaaagaaatcccaggaacctatggcctccctttcatcggaccgattttggaccgacatgactttttctacaacaaaggcagagacaaatt |
118 |
Q |
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|||| ||||||||| |||||||||| | ||||||||||||||||||||||||||| || |||||||| |||| ||||||||| |||| ||||||||||| |
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| T |
12490508 |
agctcccactaaaacaaatcccaggcagctatggcctccctttcatcggaccgatcttcgaccgacacgactacttctacaaccaaggaagagacaaatt |
12490607 |
T |
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| Q |
119 |
cttctcaactagaattcaaaaatacaattcaacagtcttcaaaaccaacatgccaccaggtccattcat |
187 |
Q |
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||||||||| ||||| ||||||||||| |||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
12490608 |
cttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcccttcat |
12490676 |
T |
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