View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10200_low_24 (Length: 201)
Name: NF10200_low_24
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10200_low_24 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 11225287 - 11225487
Alignment:
| Q |
1 |
atgcatgtactataagtgctgcacattgttgataaaattctggaaactgattgtaaaatcaaaattctgtgaactgattgtttaatgtgtacctgaatgt |
100 |
Q |
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| T |
11225287 |
atgcatgtactataagtgttgcacattgttgataaaattctggaaactgattgtaaaatcaaaattttgtgaactgattgtttaatgtgtacctgaatgt |
11225386 |
T |
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| Q |
101 |
aagctgattatttaattgaaaaggattatgcaaactgattgaaaaatatagctgtaattatacttttgggtgtgttggttgattaaatgttgtgcatgta |
200 |
Q |
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| T |
11225387 |
aagctgattatttaattcaaaaggattctgcaagttgattgaaaaatatagctgtaagtatacttttgggtgtgttggttgattaaatgttgtgcatgta |
11225486 |
T |
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| Q |
201 |
g |
201 |
Q |
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| T |
11225487 |
g |
11225487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 11225158 - 11225295
Alignment:
| Q |
62 |
aaattctgtgaactgattgtttaatgtgtacctgaatgtaagctgattatttaattgaaaaggattatgcaaactgattgaaaaatatagctgtaattat |
161 |
Q |
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| T |
11225158 |
aaattctgcgaactaat-gtttgatgtgtacctgaatgtaagttggttgtttaattgaaaaggattctgcaaactgatggaaaaagatagctgtaaatat |
11225256 |
T |
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| Q |
162 |
acttttgggtgtgttggttgattaaatgttgtgcatgta |
200 |
Q |
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| T |
11225257 |
acttttgggtgtgttgattgattaaatgttatgcatgta |
11225295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 11224937 - 11225134
Alignment:
| Q |
2 |
tgcatgtactataagtgctgcacattgttgataaaattctggaaactgattgtaaaatcaaaattctgtgaactgattgtttaatgtgtacctgaatgta |
101 |
Q |
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| T |
11224937 |
tgcatgtagtataagagttacacattgttga-aatattctgcgaactgattacaaaatcaaaattctga-aattgattgtttaatgtttacctgattgta |
11225034 |
T |
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| Q |
102 |
agctgattatttaattgaaaaggattatgcaaactgattgaaaaatatagctgtaattatacttttgggtgtgttggttgattaaatgttgtgcatgtag |
201 |
Q |
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| T |
11225035 |
agctgattgtttaattgaaaaagattctgcaaattaattgaaaaagatggatgtaagtatactttaaggcgtgttggttgattatatgttgttcatgtag |
11225134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 11225479 - 11225592
Alignment:
| Q |
2 |
tgcatgtactataagtgctgcacattgttgataaaattctggaaactgattgtaaaatcaaaattctgtgaactgattgtttaatgtgtacctgaatgta |
101 |
Q |
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| T |
11225479 |
tgcatgtagtacaagtgttacgcattcttgacaaaattctgagaactgattgtaaaatcaaaattatgcgaactgattgtttgatgtatttctgattgta |
11225578 |
T |
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| Q |
102 |
agctgattatttaa |
115 |
Q |
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| T |
11225579 |
agttgattgtttaa |
11225592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 11224891 - 11224945
Alignment:
| Q |
148 |
atagctgtaattatacttttgggtgtgttg-gttgattaaatgttgtgcatgtag |
201 |
Q |
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| T |
11224891 |
atagttgtaagtatacttttgggtgtgttaagttgattaaatgttgtgcatgtag |
11224945 |
T |
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