View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10200_low_4 (Length: 543)
Name: NF10200_low_4
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10200_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 11 - 524
Target Start/End: Complemental strand, 36575322 - 36574819
Alignment:
| Q |
11 |
agagaagaagaaagactataagtgtggaagtcaaaaatcaaagcctaaaacaatacaccagaacaaggagaaatgagtgcacagtggaaatggaaaaggg |
110 |
Q |
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|||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36575322 |
agagaagaagaaagactataggtgtggaattaaaaaatcaaagcctaaaacaatacgccagaacaaggagaaacgagtgcacagtggaaatggaaaaggg |
36575223 |
T |
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| Q |
111 |
agtggggaatatgccatgcacagtcgtctagagttgatagtagtttgacacattatggagggttaaatcggacattttggatgaaatggaaaacggaata |
210 |
Q |
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| T |
36575222 |
agtggggaatatgccatgcagagtcgtctagagttgatagtagtttgaaacattatggagggttaaatcggacattttgggtgaaatggaaaacggaata |
36575123 |
T |
|
| Q |
211 |
ggaaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttccatattttatgcacataaggtctcagattcgattctttt |
310 |
Q |
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| T |
36575122 |
gaaaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcaacattttccatattttatgcacataagatctcagatt---------- |
36575033 |
T |
|
| Q |
311 |
cgatgtcaagttccatatgttagtttctcttatttaaagaaagtaaaaattatgtacaattctttcatccggtatcactcggtcgcatatcgtagcaagt |
410 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
36575032 |
cgatgtcaagttcgatatgttagtttctcttatttaaagaaagtaaaaattatgtacaattctttcatccggtatcactcagtcgtatatcgtagcaagt |
36574933 |
T |
|
| Q |
411 |
atatcacttctatagttgacctctacaaataaactcgtgtttttatgtataaggttttggtaaaaatgttagttaatcatcttcaaaaggttatcagtag |
510 |
Q |
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| T |
36574932 |
atatcacttctatagttgacctatagaaataaactcgtgtttttatgtacaaggttttggtaaaaatgttagttaatcatcttcaaaaggttatcagtag |
36574833 |
T |
|
| Q |
511 |
tgtcatatctaatt |
524 |
Q |
| |
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|||||||||||||| |
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| T |
36574832 |
tgtcatatctaatt |
36574819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 16668284 - 16668549
Alignment:
| Q |
13 |
agaagaagaaagactataagtgtggaagtcaaaaatcaaagcctaaaacaatacaccagaacaaggagaaatgagtgcacagtggaaatggaaaagggag |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||| |
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| T |
16668284 |
agaagaagaaagactataagcgtggaagtcaaaaatcaaagcctaaaacaatacggcagaacaaggagaaacgggtgcacagtggaactggaaaagggag |
16668383 |
T |
|
| Q |
113 |
tggggaatatgccatgcacagtcgtctagagttgatagtagtttgacacattatggagggttaaatcggacattttggatgaaatggaaaacggaatagg |
212 |
Q |
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| T |
16668384 |
tggggaatatgccatgcacagtcgcctagagttgatagtagtttgacaaattatggagggttaaatcggacattttgaatcaaatggaaaacagaatagg |
16668483 |
T |
|
| Q |
213 |
aaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttccatattt |
278 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16668484 |
aaataccatctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttccttattt |
16668549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 44516700 - 44516796
Alignment:
| Q |
175 |
aaatcggacattttggatgaaatggaaaacggaataggaaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcc |
272 |
Q |
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| T |
44516700 |
aaatcggac-ttttggatgaaatggaaaacagaataggaaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcc |
44516796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 44516593 - 44516701
Alignment:
| Q |
11 |
agagaagaagaaagactataagtgtggaagtcaaaaatcaaagcctaaaacaatacaccagaacaaggagaaatgagtgcacagtggaaatggaaaaggg |
110 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| |
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| T |
44516593 |
agagaagaagaaagactataagtgtggaagtaaaaaatcaaagcctaaaacaatatggtagaacaaggagaaacgagtgcacaatggaaatggaaaaggg |
44516692 |
T |
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| Q |
111 |
agtggggaa |
119 |
Q |
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||||||||| |
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| T |
44516693 |
agtggggaa |
44516701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 8017764 - 8017797
Alignment:
| Q |
223 |
tcattcgcgggatacgcacgagaattctctcgtg |
256 |
Q |
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| T |
8017764 |
tcattcgcgggatacacacgagaattctctcgtg |
8017797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 21133759 - 21133710
Alignment:
| Q |
223 |
tcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcc |
272 |
Q |
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| T |
21133759 |
tcattcgcgggatacacacgagaattctctcgtgtcgttcagcattttcc |
21133710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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