View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10200_low_5 (Length: 483)

Name: NF10200_low_5
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10200_low_5
NF10200_low_5
[»] chr4 (4 HSPs)
chr4 (310-472)||(15879416-15879578)
chr4 (181-307)||(15567000-15567129)
chr4 (181-307)||(15579645-15579774)
chr4 (191-246)||(18216542-18216597)
[»] scaffold0770 (2 HSPs)
scaffold0770 (314-472)||(1469-1626)
scaffold0770 (190-243)||(1760-1812)
[»] scaffold0029 (4 HSPs)
scaffold0029 (314-472)||(99773-99930)
scaffold0029 (190-259)||(21049-21116)
scaffold0029 (190-259)||(34790-34857)
scaffold0029 (190-243)||(100064-100116)
[»] chr8 (2 HSPs)
chr8 (310-472)||(24487277-24487439)
chr8 (186-255)||(15708054-15708123)
[»] scaffold0503 (2 HSPs)
scaffold0503 (310-472)||(1256-1431)
scaffold0503 (310-472)||(5823-5998)
[»] chr1 (3 HSPs)
chr1 (1-98)||(2334951-2335048)
chr1 (181-255)||(2335131-2335205)
chr1 (367-416)||(13186321-13186370)
[»] scaffold0014 (1 HSPs)
scaffold0014 (182-307)||(4557-4685)
[»] chr6 (6 HSPs)
chr6 (181-307)||(15665416-15665546)
chr6 (1-93)||(15390418-15390510)
chr6 (190-249)||(16324643-16324702)
chr6 (190-247)||(18964629-18964686)
chr6 (367-431)||(18437332-18437396)
chr6 (190-247)||(20531761-20531819)
[»] scaffold0484 (2 HSPs)
scaffold0484 (178-307)||(10685-10816)
scaffold0484 (1-98)||(10505-10602)
[»] chr5 (14 HSPs)
chr5 (1-98)||(20371715-20371812)
chr5 (1-98)||(20397439-20397536)
chr5 (181-259)||(7254197-7254273)
chr5 (181-259)||(7261639-7261715)
chr5 (191-247)||(26552351-26552407)
chr5 (191-307)||(29885459-29885577)
chr5 (190-249)||(36370318-36370377)
chr5 (190-249)||(36994981-36995040)
chr5 (190-249)||(37008919-37008978)
chr5 (190-247)||(25449672-25449729)
chr5 (191-307)||(29902035-29902153)
chr5 (191-247)||(23576589-23576645)
chr5 (205-249)||(36384261-36384305)
chr5 (190-247)||(25676874-25676931)
[»] chr2 (7 HSPs)
chr2 (1-98)||(35039010-35039107)
chr2 (8-100)||(21069241-21069333)
chr2 (190-247)||(39650514-39650571)
chr2 (178-245)||(21069126-21069193)
chr2 (192-247)||(22935160-22935215)
chr2 (192-247)||(22941124-22941179)
chr2 (192-247)||(22955019-22955074)
[»] chr3 (15 HSPs)
chr3 (1-100)||(15910159-15910258)
chr3 (1-100)||(15924402-15924501)
chr3 (190-255)||(21608292-21608357)
chr3 (190-255)||(21616920-21616985)
chr3 (190-307)||(19834215-19834335)
chr3 (190-249)||(46372128-46372187)
chr3 (190-249)||(46386255-46386314)
chr3 (190-247)||(15528075-15528132)
chr3 (191-247)||(46392468-46392524)
chr3 (191-247)||(46400216-46400272)
chr3 (190-247)||(15536764-15536821)
chr3 (190-246)||(5650848-5650904)
chr3 (367-431)||(14252925-14252989)
chr3 (190-245)||(15924257-15924312)
chr3 (190-247)||(15609565-15609622)
[»] scaffold0077 (1 HSPs)
scaffold0077 (310-398)||(315-403)
[»] scaffold0094 (2 HSPs)
scaffold0094 (1-100)||(29606-29705)
scaffold0094 (190-245)||(29795-29850)
[»] scaffold0755 (1 HSPs)
scaffold0755 (190-255)||(1794-1859)
[»] chr7 (12 HSPs)
chr7 (190-247)||(15684594-15684651)
chr7 (190-255)||(42630345-42630410)
chr7 (190-255)||(8810913-8810978)
chr7 (190-255)||(8818727-8818792)
chr7 (190-255)||(9461436-9461501)
chr7 (190-255)||(9475194-9475259)
chr7 (190-255)||(16387566-16387631)
chr7 (190-255)||(16401693-16401758)
chr7 (310-365)||(42017132-42017187)
chr7 (190-255)||(30364113-30364178)
chr7 (190-255)||(30378178-30378243)
chr7 (269-307)||(36899197-36899235)
[»] scaffold0067 (1 HSPs)
scaffold0067 (190-255)||(43672-43737)
[»] scaffold1575 (1 HSPs)
scaffold1575 (181-247)||(917-984)
[»] scaffold0815 (1 HSPs)
scaffold0815 (191-245)||(4215-4269)
[»] scaffold1271 (1 HSPs)
scaffold1271 (191-247)||(1019-1075)
[»] scaffold0269 (1 HSPs)
scaffold0269 (194-247)||(13731-13784)
[»] scaffold0182 (1 HSPs)
scaffold0182 (191-259)||(6156-6222)
[»] scaffold0435 (1 HSPs)
scaffold0435 (191-247)||(7563-7619)
[»] scaffold0034 (1 HSPs)
scaffold0034 (191-247)||(118645-118701)
[»] scaffold1855 (1 HSPs)
scaffold1855 (191-259)||(261-327)
[»] scaffold0362 (1 HSPs)
scaffold0362 (190-247)||(3809-3866)
[»] scaffold0101 (2 HSPs)
scaffold0101 (310-365)||(15923-15976)
scaffold0101 (190-226)||(15735-15771)
[»] scaffold1761 (1 HSPs)
scaffold1761 (191-246)||(574-629)
[»] scaffold0422 (1 HSPs)
scaffold0422 (191-243)||(5671-5723)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 8e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 310 - 472
Target Start/End: Original strand, 15879416 - 15879578
Alignment:
310 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagt 409  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||||| ||||  |||||| ||||||| ||||||||||    
15879416 acctttggatgaacccggttgtttgctgttgtttgtgacgacaacgaatgtgttgtagttgtggttggtgacgactctgtgatgtgtccggtttggaagt 15879515  T
410 gcggctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 472  Q
    ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||    
15879516 gcggcttcgagttgatgttgttccttagtgatgtgcgattctggcttcttgtgtttcctctgt 15879578  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 15567000 - 15567129
Alignment:
181 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt---annnnnnnnggttccttc 277  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||   |        |||||||||    
15567000 ggaaaggatggggtttcggcggcagttggccggccagtgtggcggcaccaccgcgccggaaccctaacaacttatttttttgatttttttcggttccttc 15567099  T
278 tacttgttcttttctcctctactcgattct 307  Q
    ||||||||||||||||||||||||||||||    
15567100 tacttgttcttttctcctctactcgattct 15567129  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 15579645 - 15579774
Alignment:
181 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt---annnnnnnnggttccttc 277  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||   |        |||||||||    
15579645 ggaaaggatggggttccggcggcagttggtcggccagtgcggcggcaccatcgcgccggaaccctaacaacttatttttttgattttttttggttccttc 15579744  T
278 tacttgttcttttctcctctactcgattct 307  Q
    ||||||||||||||||||||||||||||||    
15579745 tacttgttcttttctcctctactcgattct 15579774  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 18216597 - 18216542
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacccta 246  Q
    ||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||||    
18216597 gggttccggcggcggttggtcggccggtgcggcgacaccaccgtgccggaacccta 18216542  T

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Target: scaffold0770 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 314 - 472
Target Start/End: Complemental strand, 1626 - 1469
Alignment:
314 ttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcgg 413  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||    
1626 ttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtctggtttggaagtgcgg 1527  T
414 ctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 472  Q
    |||  |||| |||||||| ||||||||||||||||| |||||| |||||||||||||||    
1526 cttcaagttgatgttgttccttagtgatgtgcgattctggctt-ttgtgtttcctctgt 1469  T

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Target: scaffold0770; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 1812 - 1760
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacc 243  Q
    |||||||||||||||||||||||||| || |||||||  |||| ||||||||||    
1812 ggggttccggcggcagttggccggccggtacggcggc-gcaccacgccggaacc 1760  T

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Target: scaffold0029 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 314 - 472
Target Start/End: Complemental strand, 99930 - 99773
Alignment:
314 ttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcgg 413  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||    
99930 ttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtctggtttggaagtgcgg 99831  T
414 ctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 472  Q
    |||  |||| |||||||| ||||||||||||||||| |||||| |||||||||||||||    
99830 cttcaagttgatgttgttccttagtgatgtgcgattctggctt-ttgtgtttcctctgt 99773  T

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Target: scaffold0029; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 21116 - 21049
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 259  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
21116 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaacccta--aacttatattt 21049  T

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Target: scaffold0029; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 34857 - 34790
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 259  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
34857 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaacccta--aacttatattt 34790  T

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Target: scaffold0029; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 100116 - 100064
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacc 243  Q
    |||||||||||||||||||||||||| || |||||||  |||| ||||||||||    
100116 ggggttccggcggcagttggccggccggtacggcggc-gcaccacgccggaacc 100064  T

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Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 310 - 472
Target Start/End: Original strand, 24487277 - 24487439
Alignment:
310 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagt 409  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||| ||||||  ||||||| ||    
24487277 acctttggatgaacccggttgtttgttgttgtttgtgacggcaacggatgtgttgtggttgtggttggtgacggttctgtgatgtgtctggtttggaggt 24487376  T
410 gcggctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 472  Q
    || |||| ||||| |||||||| ||||| ||||||||||| ||| ||||||||||||||||||    
24487377 gcagcttcgagttgatgttgttccttagggatgtgcgattctggattcttgtgtttcctctgt 24487439  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 15708123 - 15708054
Alignment:
186 ggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
15708123 ggatggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 15708054  T

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Target: scaffold0503 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 310 - 472
Target Start/End: Original strand, 1256 - 1431
Alignment:
310 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgt-------------gt 396  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |||             ||    
1256 acctttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtccggtttggaagt 1355  T
397 ccagtttggaagtgcggctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 472  Q
    || |||||||||||| |||| ||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||    
1356 ccggtttggaagtgcagcttcgagttgatgttgttccttagtgatgtgcgattctggcttcttgtgtttcttctgt 1431  T

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Target: scaffold0503; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 310 - 472
Target Start/End: Original strand, 5823 - 5998
Alignment:
310 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgt-------------gt 396  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |||             ||    
5823 acctttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtccggtttggaagt 5922  T
397 ccagtttggaagtgcggctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 472  Q
    || |||||||||||| |||| ||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||    
5923 ccggtttggaagtgcagcttcgagttgatgttgttccttagtgatgtgcgattctggcttcttgtgtttcttctgt 5998  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 2334951 - 2335048
Alignment:
1 atcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggactatatataggctgtagttcaca 98  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
2334951 atcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggcctatatataggctgtagttcaca 2335048  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 2335131 - 2335205
Alignment:
181 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||    
2335131 ggaagggatggggttccggcggcggttggccggccagtgtggcggcaccaccgcgccggaaccctaccaacttat 2335205  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 13186370 - 13186321
Alignment:
367 gttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcggctt 416  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||    
13186370 gttgtggttggtgacggttctgtgatgtgtccggtttggaagtgcggctt 13186321  T

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Target: scaffold0014 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 307
Target Start/End: Complemental strand, 4685 - 4557
Alignment:
182 gaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaactta---tatttannnnnnnnggttccttct 278  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||   | |||         ||||||||||    
4685 gaaaggatggggttccggcggcagttggccggccagcgcggcggcaccaccgcgccggagccctaacaacttatttttttttttttttttggttccttct 4586  T
279 acttgttcttttctcctctactcgattct 307  Q
    |||||||||||||||||||||||||||||    
4585 acttgttcttttctcctctactcgattct 4557  T

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Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 15665416 - 15665546
Alignment:
181 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatatt----tannnnnnnnggttcctt 276  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||    |         ||||||||    
15665416 ggaaaggatggggttccggcggcagttggccggccagcgcggcggcaccaccgcgccggagccctaacaacttattttttgattttttttttggttcctt 15665515  T
277 ctacttgttcttttctcctctactcgattct 307  Q
    |||||||||||||||||||||||||||||||    
15665516 ctacttgttcttttctcctctactcgattct 15665546  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 15390418 - 15390510
Alignment:
1 atcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggactatatataggctgtagt 93  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| ||||||||||||||||||    
15390418 atcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggcctatatataggctgtagt 15390510  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 16324643 - 16324702
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 249  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
16324643 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 16324702  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 18964629 - 18964686
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
18964629 ggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 18964686  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 18437396 - 18437332
Alignment:
367 gttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcggctttgagttaatgttgtt 431  Q
    ||||||||||| ||||||| |||| ||||||| ||||||| ||||||||| ||||| ||||||||    
18437396 gttgtggttggtgacggttatgtgatgtgtccggtttggacgtgcggcttcgagttgatgttgtt 18437332  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 20531761 - 20531819
Alignment:
190 ggggttccggcggcagttggccgg-ccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||||||  ||||||||| || ||||| ||||||| |||||||||||||||||    
20531761 ggggttccggcggtggttggccgggccggtgcgacggcacctccgcgccggaaccctaa 20531819  T

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Target: scaffold0484 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 178 - 307
Target Start/End: Original strand, 10685 - 10816
Alignment:
178 gatggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt--annnnnnnnggttcct 275  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||  |        ||||| |    
10685 gatggaaaggatggggttccggcggcggttggcctgccagtgcggcggcaccaccgcgccggaaccctaacaacttattttttaaatttttttggttctt 10784  T
276 tctacttgttcttttctcctctactcgattct 307  Q
    |||||||||||||| ||||| |||||||||||    
10785 tctacttgttctttcctcctatactcgattct 10816  T

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Target: scaffold0484; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 10505 - 10602
Alignment:
1 atcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggactatatataggctgtagttcaca 98  Q
    |||||||| ||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |||| ||||||||||| |||||||||||    
10505 atcaaagattcaaaggacaagggtgcatgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggcctatatataggttgtagttcaca 10602  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 20371715 - 20371812
Alignment:
1 atcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggactatatataggctgtagttcaca 98  Q
    |||||||| |||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||| |||| |||||||||||||||||||||||    
20371715 atcaaagattcaaaggacaagggtgtgtgggtgcatggtaaggccatacacccacgcgtatgggatcaaagagggctatatataggctgtagttcaca 20371812  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 20397439 - 20397536
Alignment:
1 atcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggactatatataggctgtagttcaca 98  Q
    |||||||| |||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||| |||| |||||||||||||||||||||||    
20397439 atcaaagattcaaaggacaagggtgtgtgggtgcatggtaaggccatacacccacgcgtatgggatcaaagagggctatatataggctgtagttcaca 20397536  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 7254197 - 7254273
Alignment:
181 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 259  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||  |||||||||||    
7254197 ggaaaggatggggttccggcggtggttggccggccagtgcggcggcgccaccgtgccggaacccta--aacttatattt 7254273  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 7261639 - 7261715
Alignment:
181 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 259  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||  |||||||||||    
7261639 ggaaaggatggggttccggcggtggttggccggccagtgcggcggcgccaccgtgccggaacccta--aacttatattt 7261715  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 26552351 - 26552407
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
26552351 gggttccggcggcggttggccggccggtgcggcggcaccaccgcgccggaaccctaa 26552407  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 307
Target Start/End: Complemental strand, 29885577 - 29885459
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaactta--tatttannnnnnnnggttccttctacttgttctt 288  Q
    ||||||||| ||| ||||||| ||| ||| |||||| |||||||||||||||||||||||||||  | |||         |||||||||||||||||||     
29885577 gggttccggtggcggttggccagcctgtggggcggcgccaccgcgccggaaccctaacaacttatttttttgatttttttggttccttctacttgttctc 29885478  T
289 ttctcctctactcgattct 307  Q
    |||||||||||||||||||    
29885477 ttctcctctactcgattct 29885459  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 36370318 - 36370377
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 249  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
36370318 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 36370377  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 36994981 - 36995040
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 249  Q
    |||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||||||    
36994981 ggggttccggcggtggttggccggctagtgcggcggcgccaccgcgccggaaccctaaca 36995040  T

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Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 37008919 - 37008978
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 249  Q
    |||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||||||    
37008919 ggggttccggcggtggttggccggctagtgcggcggcgccaccgcgccggaaccctaaca 37008978  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 25449672 - 25449729
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
25449672 ggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 25449729  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 307
Target Start/End: Complemental strand, 29902153 - 29902035
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatatttannnnnnnn--ggttccttctacttgttctt 288  Q
    ||||||||| ||| ||||||  ||  ||| |||||| |||||||||||||||||||||||||||| |||           |||||||||||||||||||     
29902153 gggttccggtggcggttggctagcttgtggggcggcgccaccgcgccggaaccctaacaacttatttttttgatttttttggttccttctacttgttctc 29902054  T
289 ttctcctctactcgattct 307  Q
    |||||||||||||||||||    
29902053 ttctcctctactcgattct 29902035  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 23576589 - 23576645
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||| || |||||||| || || ||||||||||||||||||||||||||||    
23576589 gggttccggcagcggttggccgaccggtacggcggcaccaccgcgccggaaccctaa 23576645  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 36384261 - 36384305
Alignment:
205 gttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 249  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
36384261 gttggacggccagttcggcggcgccaccgcgccggaaccctaaca 36384305  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 25676874 - 25676931
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||| | | | ||||||||| || |||||||||| |||||||||||||||||    
25676874 ggggttccggtgacggctggccggccggtacggcggcacctccgcgccggaaccctaa 25676931  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 35039107 - 35039010
Alignment:
1 atcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggactatatataggctgtagttcaca 98  Q
    |||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |||| |||||||||||||||||||||||    
35039107 atcaaagattcaaagaacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgagatcaaagaggcctatatataggctgtagttcaca 35039010  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 21069333 - 21069241
Alignment:
8 aatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggactatatataggctgtagttcacaga 100  Q
    |||||||||||||||||||||||||||||||||||| |||||| | || || |||||||||| |||| |||||||||||||||||||||||||    
21069333 aatcaaaggacaagggtgcgtgggtgcatggtaaggtcgtacacctacacgcatgggatcaaagaggcctatatataggctgtagttcacaga 21069241  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 39650571 - 39650514
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
39650571 ggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 39650514  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 21069193 - 21069126
Alignment:
178 gatggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 245  Q
    ||||||| |||||||||||||||||| ||||||||  | || ||||||| ||||||||||||||||||    
21069193 gatggaagggatggggttccggcggcggttggccgatcggtacggcggcgccaccgcgccggaaccct 21069126  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 22935215 - 22935160
Alignment:
192 ggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
22935215 ggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 22935160  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 22941179 - 22941124
Alignment:
192 ggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
22941179 ggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 22941124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 22955074 - 22955019
Alignment:
192 ggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
22955074 ggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 22955019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 15910258 - 15910159
Alignment:
1 atcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggactatatataggctgtagttcacaga 100  Q
    ||||||| |||||||||| ||||||||||| ||||||| |||| |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    
15910258 atcaaaggatcaaaggaccagggtgcgtggatgcatggcaaggccgtacacccacgcgtatgggatcaaagaggcctatatataggctgtagttcacaga 15910159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 15924501 - 15924402
Alignment:
1 atcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggactatatataggctgtagttcacaga 100  Q
    ||||||| |||||||||| ||||||||||| | ||||| |||| |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    
15924501 atcaaaggatcaaaggaccagggtgcgtggatccatggcaaggccgtacacccacgcgtatgggatcaaagaggcctatatataggctgtagttcacaga 15924402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 21608357 - 21608292
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
21608357 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 21608292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 21616985 - 21616920
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
21616985 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 21616920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 190 - 307
Target Start/End: Complemental strand, 19834335 - 19834215
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaactta---tatttannnnnnnnggttccttctacttgttc 286  Q
    |||||||||||||| | ||||||||| ||| |||||| |||||| ||||||||||||||||||||   | |||         ||||||||||||||||||    
19834335 ggggttccggcggcggctggccggccggtgaggcggcgccaccgtgccggaaccctaacaacttattttttttggtttttttggttccttctacttgttc 19834236  T
287 ttttctcctctactcgattct 307  Q
    |||||||||||||||||||||    
19834235 ttttctcctctactcgattct 19834215  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 46372187 - 46372128
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 249  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
46372187 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 46372128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 46386314 - 46386255
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 249  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
46386314 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 46386255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 15528075 - 15528132
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||||    
15528075 ggggttccggcggcagttggccagccggtgcggcggcgccaccgtgccggaaccctaa 15528132  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 46392468 - 46392524
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    ||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||    
46392468 gggttccggcggcggttggccggccggtgcggcggcgccaccacgccggaaccctaa 46392524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 46400216 - 46400272
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    ||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||    
46400216 gggttccggcggcggttggccggccggtgcggcggcgccaccacgccggaaccctaa 46400272  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 15536764 - 15536821
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||||||| ||||||| ||| |||||||||| |||||| |||||||||||||    
15536764 ggggttccggcggcggttggccagccggtgcggcggcgccaccgtgccggaaccctaa 15536821  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 5650848 - 5650904
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacccta 246  Q
    |||||||||||||| | ||||||||| |||||||||| | |||||||||||||||||    
5650848 ggggttccggcggcggctggccggccggtgcggcggcgctaccgcgccggaacccta 5650904  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 14252989 - 14252925
Alignment:
367 gttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcggctttgagttaatgttgtt 431  Q
    ||||||||||| ||| |||||||| ||||||| |||||||||||||| || ||||| ||||||||    
14252989 gttgtggttggtgacagttctgtgatgtgtccggtttggaagtgcggattcgagttgatgttgtt 14252925  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 15924312 - 15924257
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 245  Q
    |||||||||||||| | ||||||||| |||||||||| |||||| |||||||||||    
15924312 ggggttccggcggcggctggccggccggtgcggcggcgccaccgtgccggaaccct 15924257  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 15609565 - 15609622
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||| ||| | ||||||||| |||||||||| |||||| |||||||||||||    
15609565 ggggttccggtggcggctggccggccggtgcggcggcgccaccgtgccggaaccctaa 15609622  T

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Target: scaffold0077 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 310 - 398
Target Start/End: Complemental strand, 403 - 315
Alignment:
310 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtcc 398  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
403 acctttggatgaacttggttgtttgctgttgtttgtgacggcaacagatgtgttgtagttgtggttggtgacggctctgtgatgtgtcc 315  T

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Target: scaffold0094 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 29606 - 29705
Alignment:
1 atcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggactatatataggctgtagttcacaga 100  Q
    ||||||| |||||||||| ||||||||||| | ||||| |||| |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    
29606 atcaaaggatcaaaggaccagggtgcgtggatccatggcaaggccgtacacccacgcgtatgggatcaaagaggcctatatataggctgtagttcacaga 29705  T

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Target: scaffold0094; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 29795 - 29850
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 245  Q
    |||||||||||||| | ||||||||| |||||||||| || ||| |||||||||||    
29795 ggggttccggcggcggctggccggccggtgcggcggcgccgccgtgccggaaccct 29850  T

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Target: scaffold0755 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 1859 - 1794
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
1859 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 1794  T

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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 15684651 - 15684594
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
15684651 ggggttccggcggcggttggccggccagtgcggcggcaccaccgcgccggaaccctaa 15684594  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 42630345 - 42630410
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
42630345 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 42630410  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 8810978 - 8810913
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
8810978 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 8810913  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 8818792 - 8818727
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
8818792 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 8818727  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 9461501 - 9461436
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
9461501 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 9461436  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 9475259 - 9475194
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
9475259 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 9475194  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 16387566 - 16387631
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
16387566 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 16387631  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 16401693 - 16401758
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
16401693 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 16401758  T

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Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 42017132 - 42017187
Alignment:
310 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgt 365  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
42017132 acctttggatgaacccggttgcttgctgttgtttgtgacggcaacagatgtgttgt 42017187  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 30364113 - 30364178
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||| |||||    
30364113 ggggttccggcggtggttggccggccagcgcggcggcgccaccgcgccggaaccctaacagcttat 30364178  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 30378178 - 30378243
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||| |||||    
30378178 ggggttccggcggtggttggccggccagcgcggcggcgccaccgcgccggaaccctaacagcttat 30378243  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 36899235 - 36899197
Alignment:
269 ggttccttctacttgttcttttctcctctactcgattct 307  Q
    ||||| ||||||||||||| |||||||||||||||||||    
36899235 ggttctttctacttgttctcttctcctctactcgattct 36899197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 43672 - 43737
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 255  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||| ||||    
43672 ggggttccggcggcggttggccggccggtgcggcggcaccaccgcgtcggaaccctatcaatttat 43737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1575 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1575
Description:

Target: scaffold1575; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 984 - 917
Alignment:
181 ggaaaggatgggg-ttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
984 ggaaaggatgggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 917  T

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Target: scaffold0815 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 4215 - 4269
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 245  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||    
4215 gggttccggcggcggttggccggccggtgcggcggcgccaccgcgccggaaccct 4269  T

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Target: scaffold1271 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1271
Description:

Target: scaffold1271; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 1019 - 1075
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    ||||||||||||  ||||||||||| ||||||||||||||||| |||||||||||||    
1019 gggttccggcggaggttggccggccggtgcggcggcaccaccgtgccggaaccctaa 1075  T

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Target: scaffold0269 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 13731 - 13784
Alignment:
194 ttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||    
13731 ttccggcggcggttggccggccggtgcggcggcgccaccacgccggaaccctaa 13784  T

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Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 6222 - 6156
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 259  Q
    ||||||||||||| ||||||||||| |||||||||| |||||| ||| ||||||||  |||||||||||    
6222 gggttccggcggcggttggccggccggtgcggcggcgccaccgtgccagaacccta--aacttatattt 6156  T

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Target: scaffold0435 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 7563 - 7619
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    ||||||||||||| |||||||| || || ||||||||||||| ||||||||||||||    
7563 gggttccggcggcggttggccgaccggtacggcggcaccaccacgccggaaccctaa 7619  T

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Target: scaffold0034 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 118645 - 118701
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||| | |||| ||||||||||| || ||||||||||||||||||||||||||||    
118645 gggttctgacggcggttggccggccggtacggcggcaccaccgcgccggaaccctaa 118701  T

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Target: scaffold1855 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1855
Description:

Target: scaffold1855; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 327 - 261
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 259  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||||||||| ||  |||||||||||    
327 gggttccggcgacggttggccggccggtgcggcggcgccaccgtgccggaacctta--aacttatattt 261  T

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Target: scaffold0362 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 3809 - 3866
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 247  Q
    |||||||||| ||| | ||||||||| || |||||||||| |||||||||||||||||    
3809 ggggttccggtggcggctggccggccggtacggcggcacctccgcgccggaaccctaa 3866  T

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Target: scaffold0101 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 15923 - 15976
Alignment:
310 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgt 365  Q
    |||||||||||||||||||||  |||||||||||| |||||| || ||||||||||    
15923 acctttggatgaacccggttg--tgctgttgtttgtgacggccacggatgtgttgt 15976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 15735 - 15771
Alignment:
190 ggggttccggcggcagttggccggccagtgcggcggc 226  Q
    |||||||||||||| ||||||||||| ||||||||||    
15735 ggggttccggcggcggttggccggccggtgcggcggc 15771  T

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Target: scaffold1761 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1761
Description:

Target: scaffold1761; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 574 - 629
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacccta 246  Q
    ||||||||||||  |||||||| || |||||||||| |||||||| ||||||||||    
574 gggttccggcggtggttggccgaccggtgcggcggcgccaccgcgtcggaacccta 629  T

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Target: scaffold0422 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 5671 - 5723
Alignment:
191 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacc 243  Q
    |||||| |||||| ||||||||||| |||| |||||||| ||||| |||||||    
5671 gggttctggcggcggttggccggccggtgcagcggcaccgccgcgtcggaacc 5723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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