View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10200_low_6 (Length: 432)

Name: NF10200_low_6
Description: NF10200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10200_low_6
NF10200_low_6
[»] chr1 (9 HSPs)
chr1 (17-432)||(45795308-45795723)
chr1 (12-432)||(13867451-13867871)
chr1 (17-326)||(34352613-34352940)
chr1 (17-142)||(5808973-5809098)
chr1 (262-431)||(26510243-26510412)
chr1 (239-322)||(3544964-3545047)
chr1 (239-333)||(1248448-1248542)
chr1 (17-200)||(1248208-1248391)
chr1 (17-134)||(20987563-20987680)
[»] chr4 (4 HSPs)
chr4 (17-432)||(43516371-43516786)
chr4 (17-130)||(2071944-2072057)
chr4 (238-340)||(20544261-20544362)
chr4 (233-271)||(54483016-54483054)
[»] chr3 (7 HSPs)
chr3 (12-432)||(40513342-40513762)
chr3 (232-431)||(34829504-34829703)
chr3 (239-322)||(31675124-31675207)
chr3 (239-322)||(31921213-31921296)
chr3 (60-179)||(34829774-34829892)
chr3 (222-271)||(18368801-18368850)
chr3 (17-45)||(34829889-34829917)
[»] chr2 (5 HSPs)
chr2 (17-431)||(11196436-11196868)
chr2 (17-74)||(33583974-33584031)
chr2 (222-271)||(35488082-35488131)
chr2 (17-137)||(9006237-9006357)
chr2 (222-271)||(8066072-8066121)
[»] chr8 (6 HSPs)
chr8 (17-142)||(6245483-6245606)
chr8 (232-381)||(9510917-9511066)
chr8 (232-381)||(6245262-6245411)
chr8 (17-73)||(31689114-31689170)
chr8 (45-137)||(15439521-15439613)
chr8 (45-137)||(15530825-15530917)
[»] chr5 (2 HSPs)
chr5 (17-201)||(380234-380418)
chr5 (239-322)||(476407-476490)
[»] chr6 (7 HSPs)
chr6 (17-206)||(14686631-14686820)
chr6 (239-322)||(14844000-14844083)
chr6 (238-332)||(14686870-14686964)
chr6 (222-273)||(23065893-23065944)
chr6 (222-273)||(9565610-9565661)
chr6 (232-323)||(25350416-25350507)
chr6 (17-134)||(19350344-19350461)
[»] scaffold0555 (1 HSPs)
scaffold0555 (239-322)||(7862-7945)
[»] scaffold0043 (1 HSPs)
scaffold0043 (239-322)||(34472-34555)
[»] chr7 (5 HSPs)
chr7 (17-134)||(20349364-20349481)
chr7 (238-350)||(26855879-26855991)
chr7 (52-113)||(19545060-19545121)
chr7 (17-73)||(23887545-23887601)
chr7 (17-73)||(23898721-23898777)


Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 45795723 - 45795308
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  45795723 agattagggatggggtaggcgatgtagaggggggctggtttgtagatagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacag 45795624  T
Q  117 gtggctgggtgatgttcctttttgtatcaggttctgttgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttgatggagaggcg 216  Q
    |||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45795623 gtggctaggtgatgttcctttttgtatcagtttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttgatggagaggcg 45795524  T
Q  217 tcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaaca 316  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  45795523 tggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgttttgcagtctgatatttctgaca 45795424  T
Q  317 ggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggaga 416  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45795423 ggtggcaatgggactccgattctgattgtggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctccagatgcttccattggaga 45795324  T
Q  417 ccttatctggcataat 432  Q
    |||||| |||||||||    
T  45795323 ccttatttggcataat 45795308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 432
Target Start/End: Original strand, 13867451 - 13867871
Alignment:
Q  12 agcagagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtat 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13867451 agcaaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggttctagtacttacttttggtat 13867550  T
Q  112 gacatgtggctgggtgatgttcctttttgtatcaggttctgttgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttgatggag 211  Q
    |||| |||||| ||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13867551 gacaggtggcttggtgatgttcctttttgtatcaggttccgtcgtctttttaatttagtgtctaataagttgagcacggtagctgatatggttgttggag 13867650  T
Q  212 aggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttc 311  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13867651 aggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgttttgcagtctgatatttc 13867750  T
Q  312 taacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccatt 411  Q
    | ||||||||||||| |||||||||||||||| |||||||||||||| || || |||||||||||| ||||||||||||||||||| |||||||||||||    
T  13867751 tgacaggtggcaatgggactccgattctgattacggttacacggtgatagatgcctatcaacaacttacagctcaggttcaacctccagatgcttccatt 13867850  T
Q  412 ggagaccttatctggcataat 432  Q
    || ||||||||||||||||||    
T  13867851 ggcgaccttatctggcataat 13867871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 34352940 - 34352613
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| || ||||||||| |||||| |||||||     
T  34352940 agattagggatggggtaggcgatgtagaggggggttggtttgcagagagggtgtcgaaaaaggtaggagattgcactagtactttcttttgatatgacag 34352841  T
Q  117 gtggctgggtgatgttcctttttgtatcaggttctgttgtctatttaatttagtgtctaataagttgagcacggtagctgatat---------------- 200  Q
    |||||| ||||||||||||||||||||||||||  || | |||||| | |||| |||||||||| ||||||| |||||| ||||                    
T  34352840 gtggcttggtgatgttcctttttgtatcaggttgcgtcgcctatttgacttagcgtctaataagctgagcacagtagctaatatggttgcccttggtggg 34352741  T
Q  201 --ggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgc 298  Q
      |||||| |||||||||| |   ||| |||||||||| |||||||||||||||||  ||||||||||||||| ||  |||| |||||||||||||||||    
T  34352740 gaggttgacggagaggcgtggggctggaggcgtaggttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaactaatggtgtcgttttgc 34352641  T
Q  299 agtctgatatttctaacaggtggcaatg 326  Q
    |||||||||||| | |||||||||||||    
T  34352640 agtctgatatttatgacaggtggcaatg 34352613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 5809098 - 5808973
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    ||||||||||||||||||| |||| ||| || || ||||| ||||||||||||||||| || || || | ||||  |||||| | ||||||||||||||     
T  5809098 agattagggatggggtaggtgatgcagatggaggttggttcgcagagagggtgtcgaaaaaggtggggggtggcattagtacattcttttggtatgacag 5808999  T
Q  117 gtggctgggtgatgttcctttttgta 142  Q
    |||||| |||||||||||||||||||    
T  5808998 gtggcttggtgatgttcctttttgta 5808973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 262 - 431
Target Start/End: Original strand, 26510243 - 26510412
Alignment:
Q  262 gaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggcaatgagactccgattctgattgcggttacacggtgagag 361  Q
    |||||||||| ||  ||| || ||||||| |||||||||| |||| ||||| ||||||||||||| ||||| |||| || | | |||||||| |||||||    
T  26510243 gaggagtgtaggcaattacttgatggtgttgttttgcagtatgatctttctgacaggtggcaatgggactctgattttgctggtggttacactgtgagag 26510342  T
Q  362 gtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggagaccttatctggcataa 431  Q
    || ||||| ||||||||||| |||||  | | |||| ||||| | | || ||||| ||||||||||||||    
T  26510343 gtttctataaacaactgacaactcagactgatcctccagatggtactatgggagatcttatctggcataa 26510412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 3544964 - 3545047
Alignment:
Q  239 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggc 322  Q
    |||||||||||||||| ||| |||| ||||||| ||  ||| |||||||||| ||||||||||||||||||||| |||||||||    
T  3544964 gggtgtgggaggaggagttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 3545047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 1248448 - 1248542
Alignment:
Q  239 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggcaatgagactcc 333  Q
    |||| |||||||||||  || |||||||||||| ||  ||| |||||||||| |||||||| | |||||||||| |||||||||| || ||||||    
T  1248448 gggtatgggaggaggagctgttagaggagtgtaggcaattacttaatggtgttgttttgcaatttgatatttctgacaggtggcactgggactcc 1248542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 1248208 - 1248391
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    |||||||||||||||| || || |  | |||| | |||||||  ||||||||||||||||  |||||  ||||||    ||||||||||||||||||||     
T  1248208 agattagggatggggtgggtgaagctgcggggagttggtttgaggagagggtgtcgaagagggtagggaatggcttggctacttacttttggtatgacag 1248307  T
Q  117 gtggctgggtgatgttcctttttgtatcaggttctgttgtctatttaatttagtgtctaataagttgagcacggtagctgatat 200  Q
    |||||| |||||||| ||| || | |  |||||  || || ||||| | |||| | ||||||||||||| ||||| || |||||    
T  1248308 gtggcttggtgatgtccctcttcggacaaggtttagtcgtttatttgacttagcgactaataagttgagtacggtggcagatat 1248391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 20987680 - 20987563
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    |||||||||||||| ||||||||   |||| | | ||||||||||||| ||||||||| |  |  || |||||  |||||||||  ||||||||||| ||    
T  20987680 agattagggatgggataggcgattctgaggagagttggtttgcagagaaggtgtcgaaaagggagggggatggaactagtactttattttggtatgatat 20987581  T
Q  117 gtggctgggtgatgttcc 134  Q
    |||| | |||||||||||    
T  20987580 gtggttaggtgatgttcc 20987563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 43516371 - 43516786
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  43516371 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaaaaaagtaggagatggctctagtacttacttttggtatgacaa 43516470  T
Q  117 gtggctgggtgatgttcctttttgtatcaggttctgttgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttgatggagaggcg 216  Q
    |||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43516471 gtggcttggtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttgatggagaggcg 43516570  T
Q  217 tcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaaca 316  Q
    | || ||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | |    
T  43516571 tggagttggcggcgtaggttgagggtgtgggaggaggatatgctagaggagtgtaggcatttaattaatggtgtcgttttgcagtctgatatttctgaga 43516670  T
Q  317 ggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggaga 416  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  43516671 ggtggcaatgggactttgattctgattgcggttacacggtgagaggtgtctatcaacaaccgacagctcaggttcaacctccagatgctaccattggaga 43516770  T
Q  417 ccttatctggcataat 432  Q
     |||||||||||||||    
T  43516771 tcttatctggcataat 43516786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 2072057 - 2071944
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    |||||||||| |||||||| || |  |||||||||||||||||||||||||||||||  || ||||| ||||| |    |||||||||||||| |||||     
T  2072057 agattagggacggggtaggtgaggccgaggggggctggtttgcagagagggtgtcgagaaaggtaggggatggtttacatacttacttttggtctgacag 2071958  T
Q  117 gtggctgggtgatg 130  Q
    |||| | |||||||    
T  2071957 gtgggttggtgatg 2071944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 340
Target Start/End: Complemental strand, 20544362 - 20544261
Alignment:
Q  238 agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggcaatgagactccgatt 337  Q
    |||| ||||||||||||  || |||||||||||| | |||||||||||||||||| |||||||  | ||||| || ||||||| ||||| ||||| ||||    
T  20544362 agggcgtgggaggaggagatgttagaggagtgtaggtttttaattaatggtgtcg-tttgcagcataatattactgacaggtgacaatgggactctgatt 20544264  T
Q  338 ctg 340  Q
    |||    
T  20544263 ctg 20544261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 54483016 - 54483054
Alignment:
Q  233 ggttaagggtgtgggaggaggatttgctagaggagtgta 271  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  54483016 ggttatgggtgtgggaggaggatttggtagaggagtgta 54483054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 432
Target Start/End: Original strand, 40513342 - 40513762
Alignment:
Q  12 agcagagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtat 111  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40513342 agcaaagattagggatggggtagacggtgtagaggggggctggtttgcagagagagtgtcgaagaaagtaggagatggctctagtacttacttttggtat 40513441  T
Q  112 gacatgtggctgggtgatgttcctttttgtatcaggttctgttgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttgatggag 211  Q
    ||||  |||||||||||||||||||| |||||||||||| || | || ||||||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  40513442 gacagatggctgggtgatgttcctttctgtatcaggttccgtcgactttttaatttagtgtctgataagttgagcacgatagctgatatggttgctggag 40513541  T
Q  212 aggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttc 311  Q
    ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  40513542 aggggtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggctgttaattaatggtgtcgttttgcagtatgatatttc 40513641  T
Q  312 taacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccatt 411  Q
    | ||||||||||||| ||||||||| | |||| ||||||||||||||| | || |||||||||||| |||| |||||||||||||| |||||||||||||    
T  40513642 tgacaggtggcaatgggactccgatacggattacggttacacggtgagcgatgcctatcaacaacttacagttcaggttcaacctccagatgcttccatt 40513741  T
Q  412 ggagaccttatctggcataat 432  Q
    || ||||||||||||||||||    
T  40513742 ggcgaccttatctggcataat 40513762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 232 - 431
Target Start/End: Complemental strand, 34829703 - 34829504
Alignment:
Q  232 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggcaatgagact 331  Q
    ||||| ||| |||||||||||||  ||||||||||||||| |   ||| |||||||||| ||||||||||||||| ||||| ||||||||||||| ||||    
T  34829703 aggttgaggctgtgggaggaggagatgctagaggagtgtaggaaattacttaatggtgttgttttgcagtctgatctttctgacaggtggcaatgggact 34829604  T
Q  332 ccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggagaccttatctggcataa 431  Q
    | |||| |||| | |||||||| ||||||||||||||||||||||||| | |||||| | | |||| | ||| | | || ||||| ||||||||||||||    
T  34829603 ctgattttgatggtggttacactgtgagaggtgtctatcaacaactgaaaactcaggctgatcctccatatggtactatgggagatcttatctggcataa 34829504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 31675207 - 31675124
Alignment:
Q  239 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggc 322  Q
    |||||||||||||||| ||| |||||||||||| |   ||| |||||||||| ||||||||||||||||||||| |||||||||    
T  31675207 gggtgtgggaggaggagttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggc 31675124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 31921213 - 31921296
Alignment:
Q  239 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggc 322  Q
    |||||||||||||||| ||| |||||||||||| |   ||| |||||||||| ||||||||||||||||||||| |||||||||    
T  31921213 gggtgtgggaggaggagttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggc 31921296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 34829892 - 34829774
Alignment:
Q  60 agagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacatgtggctgggtgatgttcctttttgtatcaggttctgttgtcta 159  Q
    |||||||||||| || |||||||| |||| | ||||||||| |||||||||||||| |||||| |||||||| ||||||||||  |||||  || |  ||    
T  34829892 agagagggtgtcaaa-aaagtaggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtactaggtttcgtcggtta 34829794  T
Q  160 tttaatttagtgtctaataa 179  Q
    ||| || |||||||||||||    
T  34829793 tttgatctagtgtctaataa 34829774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 18368801 - 18368850
Alignment:
Q  222 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 271  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  18368801 ttggcggcgtaggttgtgggtgtgggaggaggctttgctagaggagtgta 18368850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 34829917 - 34829889
Alignment:
Q  17 agattagggatggggtaggcgatgtagag 45  Q
    |||||||||||||||||||||||||||||    
T  34829917 agattagggatggggtaggcgatgtagag 34829889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 11196868 - 11196436
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||| || ||||| |||||| ||||||||| ||||| | |||| |     
T  11196868 agattagggatggggtaggcgatgtagagggtggttggtttgcacagagggtatcgaaaaaggtaggggatggcactagtactttctttttgcatgatag 11196769  T
Q  117 gtggctgggtgatgttcctttttgtatcaggttctgttgtctatttaatttagtgtctaataagttgagcacggtagctgatatg--------------- 201  Q
    |||||| ||||||  ||||||||||| ||||||| ||||| ||||| | |||| |||||||||  |||| ||||| |||||||||                   
T  11196768 gtggcttggtgatactcctttttgtaccaggttccgttgtttatttgacttagcgtctaataaactgagtacggtggctgatatggttgctattggtggg 11196669  T
Q  202 ---gttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgc 298  Q
       ||||| |||||||||| |  |||| |||| | ||| |||||||||||||||||  ||||||||||||||| ||  ||||||||||||||||||||||    
T  11196668 gaggttgacggagaggcgtggggttggaggcgaatgttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaattaatggtgtcgttttgc 11196569  T
Q  299 agtctgatatttctaacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctct 398  Q
    ||  | |||||||| ||||||||||||| ||||| ||||||| | | |||||||  ||| |||| |||||||| || || ||  |||||| | ||||||     
T  11196568 agcataatatttctgacaggtggcaatgggactctgattctgctggtggttacagtgtgggaggcgtctatcatcaccttactactcaggctgaacctcc 11196469  T
Q  399 agatgcttccattggagaccttatctggcataa 431  Q
    ||||| | | || ||||| ||||||||||||||    
T  11196468 agatgttactataggagatcttatctggcataa 11196436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 33583974 - 33584031
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaa 74  Q
    ||||||||||||||||||  || || || |||||||||||||||||||||||||||||    
T  33583974 agattagggatggggtagctgaagttgacgggggctggtttgcagagagggtgtcgaa 33584031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 35488131 - 35488082
Alignment:
Q  222 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 271  Q
    |||||||||||||||  ||| ||||||||||| |||||||||||||||||    
T  35488131 ttggcggcgtaggttgtgggcgtgggaggaggctttgctagaggagtgta 35488082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 9006357 - 9006237
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    ||||||||||  || |||| ||||  || ||||| ||||| || |||||||||||||| | ||| |||||||| ||| |||||| ||||||||| || |     
T  9006357 agattagggacaggttaggagatgctgatgggggatggttcgctgagagggtgtcgaaaagagtgggagatggttctcgtactttcttttggtacgataa 9006258  T
Q  117 gtggctgggtgatgttccttt 137  Q
    |||| | || |||||||||||    
T  9006257 gtggttaggagatgttccttt 9006237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 8066072 - 8066121
Alignment:
Q  222 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 271  Q
    |||||||||||||||  ||| ||||||||||| | |||||||||||||||    
T  8066072 ttggcggcgtaggttgtgggcgtgggaggaggctatgctagaggagtgta 8066121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 6245606 - 6245483
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    ||||||||||||||||||| |||| ||| ||||| ||||| ||||||  ||||||||| || || || |||||| ||||||||| |||||||||||| |     
T  6245606 agattagggatggggtaggtgatgcagatgggggttggttcgcagag--ggtgtcgaaaaaggtgggggatggcactagtactttcttttggtatgatag 6245509  T
Q  117 gtggctgggtgatgttcctttttgta 142  Q
    |||||| |||||||||||||||||||    
T  6245508 gtggcttggtgatgttcctttttgta 6245483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 9511066 - 9510917
Alignment:
Q  232 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggcaatgagact 331  Q
    ||||| |||||||||||||||||  || |||||||||||| ||  ||  |||||||||| ||||||||| || |||||| | |||| ||||  || ||||    
T  9511066 aggttgagggtgtgggaggaggagatgttagaggagtgtaggcaattgcttaatggtgttgttttgcagcctaatatttttgacagatggctttgggact 9510967  T
Q  332 ccgattctgattgcggttacacggtgagaggtgtctatcaacaactgaca 381  Q
    | | ||||||| | |||||||| ||||||||||||||| |||||||||||    
T  9510966 ctgtttctgatggtggttacactgtgagaggtgtctatgaacaactgaca 9510917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 6245411 - 6245262
Alignment:
Q  232 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggcaatgagact 331  Q
    ||||| |||||||||||||||||  || |||| ||||||| |   ||| |||||||||| ||||||| | ||||||||||| ||| |||||  || || |    
T  6245411 aggttgagggtgtgggaggaggagatgttagatgagtgtaggtaattacttaatggtgttgttttgccgcctgatatttctgacaagtggctttgggatt 6245312  T
Q  332 ccgattctgattgcggttacacggtgagaggtgtctatcaacaactgaca 381  Q
    | | ||||||| | |||||||| ||||||||||||||| |||||||||||    
T  6245311 ctgtttctgatggtggttacactgtgagaggtgtctatgaacaactgaca 6245262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 31689114 - 31689170
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcga 73  Q
    ||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||||    
T  31689114 agattagggatggtgtaggcgttgtagaggagagctggtttgcagagagggtgtcga 31689170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 15439613 - 15439521
Alignment:
Q  45 ggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacatgtggctgggtgatgttccttt 137  Q
    ||||||| ||||||| || |||||||||||||  || || ||||| |||||||||| ||||||| | || | |||||| || |||||||||||    
T  15439613 ggggggccggtttgcggaaagggtgtcgaagagcgtgggggatggttctagtactttcttttggcacgataggtggctaggcgatgttccttt 15439521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 15530917 - 15530825
Alignment:
Q  45 ggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacatgtggctgggtgatgttccttt 137  Q
    ||||||| ||||||| || |||||||||||||  || || ||||| |||||||||| ||||||| | || | |||||| || |||||||||||    
T  15530917 ggggggccggtttgcggaaagggtgtcgaagagcgtgggggatggttctagtactttcttttggcacgataggtggctaggcgatgttccttt 15530825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 380418 - 380234
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    |||||||||| ||| |||| || |  ||||||||||||||||| |||||||||||||||  ||| || ||||| |||||||||| ||||||| | ||||     
T  380418 agattagggacgggttaggagaaggtgaggggggctggtttgcggagagggtgtcgaagcgagtgggggatggttctagtactttcttttggcacgacag 380319  T
Q  117 gtggctgggtgatgttcctttttgtatcaggttctgttgtctatttaatttagtgtctaataagttgagcacggtagctgatatg 201  Q
    |||||| || |||||||||||  |||   ||||  || || ||||| |||||| | ||||||||||| ||||||| |||||||||    
T  380318 gtggctaggcgatgttcctttacgtacacggtttagtcgtttatttgatttagcgactaataagttgtgcacggtcgctgatatg 380234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 476490 - 476407
Alignment:
Q  239 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggc 322  Q
    |||||||||||||||| ||| |||||||||||| ||  ||| |||||||||| ||||||||||||||||||||| |||||||||    
T  476490 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 14686631 - 14686820
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    ||||||||||||| ||||| || ||||  ||||| ||||||||||||||| |||| || ||  | || || ||  |||| |||||||||||||||||||     
T  14686631 agattagggatggtgtaggtgaggtaggagggggttggtttgcagagaggttgtcaaaaaagatgggggacggaactagcacttacttttggtatgacag 14686730  T
Q  117 gtggctgggtgatgttcctttttgtatcaggttctgttgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttga 206  Q
    |||||| ||||||   ||||||||||  || ||| || || | ||| ||||||  |||||||| |||||||| || ||||||||||||||    
T  14686731 gtggcttggtgatacacctttttgtactagattccgtcgtttgtttgatttagcatctaataaattgagcactgtggctgatatggttga 14686820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 14844000 - 14844083
Alignment:
Q  239 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggc 322  Q
    |||||||||||||||| ||| |||| ||||||| ||  ||| |||||||||| ||||||||||||||||||||| |||||||||    
T  14844000 gggtgtgggaggaggagttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 14844083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 332
Target Start/End: Original strand, 14686870 - 14686964
Alignment:
Q  238 agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggcaatgagactc 332  Q
    |||| ||||||||| ||  || |||||||||||| | ||||||||||||||||| ||||||||  | |||| ||| ||||||||||||| |||||    
T  14686870 agggcgtgggaggatgagctgttagaggagtgtagggttttaattaatggtgtcattttgcagcataatatctctgacaggtggcaatgggactc 14686964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 23065893 - 23065944
Alignment:
Q  222 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaag 273  Q
    |||||||||| ||||  ||| |||||||||||||||||||||||||||||||    
T  23065893 ttggcggcgtcggttgtgggcgtgggaggaggatttgctagaggagtgtaag 23065944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 9565661 - 9565610
Alignment:
Q  222 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaag 273  Q
    |||| ||||||||||  ||| ||||||||||| |||||||||||||||||||    
T  9565661 ttggaggcgtaggttgtgggcgtgggaggaggctttgctagaggagtgtaag 9565610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 323
Target Start/End: Complemental strand, 25350507 - 25350416
Alignment:
Q  232 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggca 323  Q
    |||||| ||| |||||||||||| ||| | |||||||||| |||| |  |||||| | | ||||||||| |||| |||||| ||||||||||    
T  25350507 aggttatgggcgtgggaggaggagttggtggaggagtgtaggcttcttcttaatgattttgttttgcagactgacatttctgacaggtggca 25350416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 19350461 - 19350344
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    ||||||||||||| ||||| || |  || ||||| |||||||||| |||||||||||||  |||||| ||||| || |  ||||  ||||||| |||||     
T  19350461 agattagggatggagtaggagaggatgatgggggatggtttgcagggagggtgtcgaagttagtaggggatggttcgaacactttgttttggtttgacag 19350362  T
Q  117 gtggctgggtgatgttcc 134  Q
    |||| | || ||||||||    
T  19350361 gtggttaggagatgttcc 19350344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 7945 - 7862
Alignment:
Q  239 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggc 322  Q
    |||||||||||||||| ||| |||||||||||| ||  ||| |||||| ||| ||||||||||||||||||||| |||||||||    
T  7945 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatgttgttgttttgcagtctgatatttctgacaggtggc 7862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 34472 - 34555
Alignment:
Q  239 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggc 322  Q
    |||||||||||||||| ||| |||||||||||| ||  ||| |||||||||| ||||| ||||||||||||||| |||||||||    
T  34472 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgttttacagtctgatatttctgacaggtggc 34555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 20349481 - 20349364
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacat 116  Q
    |||||||||||||| ||||||||   |||| ||| ||||||||||||||||||||||| || || || ||||   ||||||||| |||||||||||| |     
T  20349481 agattagggatgggataggcgattctgaggagggttggtttgcagagagggtgtcgaaaaaggtgggggatgtaactagtactttcttttggtatgatag 20349382  T
Q  117 gtggctgggtgatgttcc 134  Q
    |||| | |||||||||||    
T  20349381 gtggttaggtgatgttcc 20349364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 350
Target Start/End: Complemental strand, 26855991 - 26855879
Alignment:
Q  238 agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctaacaggtggcaatgagactccgatt 337  Q
    |||| ||||||||||||  || |||||||||||| ||||||||||||||||||| ||||||||  | |||| ||  ||||||||||||| ||||| ||||    
T  26855991 agggcgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcattttgcagcataatatctccgacaggtggcaatgggactcggatt 26855892  T
Q  338 ctgattgcggtta 350  Q
     || | |||||||    
T  26855891 atggtggcggtta 26855879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 19545060 - 19545121
Alignment:
Q  52 tggtttgcagagagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatga 113  Q
    |||||||| |||||||||||||| | ||| |||||||| |||||||||| ||||||||||||    
T  19545060 tggtttgctgagagggtgtcgaaaagagtgggagatggttctagtactttcttttggtatga 19545121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 23887601 - 23887545
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcga 73  Q
    |||||||||||||| |||| || ||||| ||||| |||||| |||| ||||||||||    
T  23887601 agattagggatgggttaggagaagtagatgggggatggtttacagatagggtgtcga 23887545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 23898777 - 23898721
Alignment:
Q  17 agattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcga 73  Q
    |||||||||||||| |||| || ||||| ||||| |||||| |||| ||||||||||    
T  23898777 agattagggatgggttaggagaagtagatgggggatggtttacagatagggtgtcga 23898721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University