View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_high_18 (Length: 332)

Name: NF10201A_high_18
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_high_18
NF10201A_high_18
[»] chr6 (5 HSPs)
chr6 (21-317)||(2361742-2362038)
chr6 (21-317)||(2366346-2366645)
chr6 (102-197)||(2306125-2306220)
chr6 (131-207)||(2356163-2356239)
chr6 (60-105)||(2349447-2349492)
[»] chr5 (1 HSPs)
chr5 (60-317)||(41341688-41341946)
[»] chr3 (1 HSPs)
chr3 (59-317)||(4303542-4303803)
[»] chr4 (1 HSPs)
chr4 (59-142)||(5805808-5805897)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 2361742 - 2362038
Alignment:
21 caacaacaatattttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttgg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2361742 caacaacaatattttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttgg 2361841  T
121 tggagttaaagcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgagga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
2361842 tggagttaaagcaatggtttactcaattaagtttcaacattgttcttccagtgctggttgggaaacgatattttggtgctacgaatgtggcgaacgagga 2361941  T
221 agaagcgcaaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2361942 agaagcgcaaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgat 2362038  T

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Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 2366346 - 2366645
Alignment:
21 caacaacaatattttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttgg 120  Q
    ||||||||| ||||||||| || |||||| ||   ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||    
2366346 caacaacaacattttcatatcttagaagtgcaacggtggattaaagagctcttcgatgtttggtttagtaaaaagaatgagtcatcaaactacgtgttgg 2366445  T
121 tggagttaaagcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtg---ctacgaatgcggcgaacga 217  Q
    ||||| | ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||    ||||||||| |   |||||    
2366446 tggagatgaagcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacaatattttggtcatcctacgaatgtgatcaacga 2366545  T
218 ggaagaagcgcaaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgat 317  Q
    |||||||| |||||||||| ||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
2366546 ggaagaagggcaaagatgtgtaaaagctttaaaaaagttgatgcatttgttaggggtgttcacaataggagatgccattcctttactaaaatggtttgat 2366645  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 2306125 - 2306220
Alignment:
102 tcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggt 197  Q
    ||||||||||||| ||| || |||||  | ||||||||||| || ||||  |||||||| ||||||| |||| | ||||||||| |||||||||||    
2306125 tcatcaaactacgtgttagtagagttggatcaatggtttacacatttaacattcaacatggttcttcgaatggttgttgggaaaagatattttggt 2306220  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 2356163 - 2356239
Alignment:
131 gcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatg 207  Q
    ||||||||||| | | || | |||||||||||| ||||| ||| | |||||||| |||||||||||||||| |||||    
2356163 gcaatggtttattgagttgaatttcaacattgtacttccgatgattgttgggaagcgatattttggtgctatgaatg 2356239  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 2349447 - 2349492
Alignment:
60 attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcat 105  Q
    ||||||||||||||| ||||||||| ||| |||||||| |||||||    
2349447 attaaagagctcttcgatgtttggtatagcaaaaagaaagagtcat 2349492  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 60 - 317
Target Start/End: Original strand, 41341688 - 41341946
Alignment:
60 attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaaca 159  Q
    ||||||||| ||| ||||||||||| ||||| | ||||| ||||||||||||| | ||||||||| || || ||||| ||||||||||| |||   ||||    
41341688 attaaagaggtctacaatgtttggtgtagtagagagaacaagtcatcaaactatgtgttggtggacttgaaacaatgttttactcaattgagtaaaaaca 41341787  T
160 ttgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgaggaagaagcgcaaagatgtataaaagctttacaagagttgat 259  Q
    |||||||||||||| |||||||||| ||||||||||| |||||||||| ||   || |||||||||  |||| |||||| ||||||||  ||||| || |    
41341788 ttgttcttccaatgttggttgggaagcgatattttggagctacgaatgtggttgacaaggaagaagaacaaaaatgtatgaaagctttggaagagatgtt 41341887  T
260 gcgattgttaggggtgttcacaataggagatgc-cattccttttctaaaatggtttgat 317  Q
     || |||||||||||||||||  | || | ||| | | |||||||||||||||||||||    
41341888 acgtttgttaggggtgttcacggtgggtggtgctcttcccttttctaaaatggtttgat 41341946  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 59 - 317
Target Start/End: Original strand, 4303542 - 4303803
Alignment:
59 gattaaagagctcttcaatgtttggtttagtaaa---aagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttc 155  Q
    |||||||||||||| ||||||||||| | |||||   || |||||||||||||| ||   | |||||||| | |||||||||||||||||||| | | |     
4303542 gattaaagagctctacaatgtttggtgtcgtaaagagaacaacgagtcatcaaaatatttgatggtggaggtcaagcaatggtttactcaattgaatata 4303641  T
156 aacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgaggaagaagcgcaaagatgtataaaagctttacaagagt 255  Q
     || | ||||||||| || ||||||| || |||||||| ||| |||| ||||      || |||||||||   ||| |||| |||||||| || |||||     
4303642 gacttggttcttccattgttggttggaaagcgatatttcggttctacaaatgttatcgacaaggaagaagtagaaatatgtgtaaaagctataaaagaga 4303741  T
256 tgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgat 317  Q
    || |||| ||| | |||||||||||| | ||||||||  |||||||| ||||||||||||||    
4303742 tgctgcgtttgatgggggtgttcacagtgggagatgctcttccttttttaaaatggtttgat 4303803  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 5805897 - 5805808
Alignment:
59 gattaaagagctcttcaatgtttggtttagtaaaaagaacgagt------catcaaactacgcgttggtggagttaaagcaatggtttac 142  Q
    ||||||||||||||||||| |||||| ||| ||||||||||| |      |||||||||| | ||||||||| || ||||||||||||||    
5805897 gattaaagagctcttcaatatttggtctagaaaaaagaacgaatcaaatccatcaaactatgtgttggtggacttgaagcaatggtttac 5805808  T

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