View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_high_18 (Length: 332)
Name: NF10201A_high_18
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10201A_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 2361742 - 2362038
Alignment:
Q |
21 |
caacaacaatattttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttgg |
120 |
Q |
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T |
2361742 |
caacaacaatattttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttgg |
2361841 |
T |
 |
Q |
121 |
tggagttaaagcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgagga |
220 |
Q |
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T |
2361842 |
tggagttaaagcaatggtttactcaattaagtttcaacattgttcttccagtgctggttgggaaacgatattttggtgctacgaatgtggcgaacgagga |
2361941 |
T |
 |
Q |
221 |
agaagcgcaaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgat |
317 |
Q |
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T |
2361942 |
agaagcgcaaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgat |
2362038 |
T |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 2366346 - 2366645
Alignment:
Q |
21 |
caacaacaatattttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttgg |
120 |
Q |
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T |
2366346 |
caacaacaacattttcatatcttagaagtgcaacggtggattaaagagctcttcgatgtttggtttagtaaaaagaatgagtcatcaaactacgtgttgg |
2366445 |
T |
 |
Q |
121 |
tggagttaaagcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtg---ctacgaatgcggcgaacga |
217 |
Q |
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T |
2366446 |
tggagatgaagcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacaatattttggtcatcctacgaatgtgatcaacga |
2366545 |
T |
 |
Q |
218 |
ggaagaagcgcaaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgat |
317 |
Q |
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T |
2366546 |
ggaagaagggcaaagatgtgtaaaagctttaaaaaagttgatgcatttgttaggggtgttcacaataggagatgccattcctttactaaaatggtttgat |
2366645 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 2306125 - 2306220
Alignment:
Q |
102 |
tcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggt |
197 |
Q |
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T |
2306125 |
tcatcaaactacgtgttagtagagttggatcaatggtttacacatttaacattcaacatggttcttcgaatggttgttgggaaaagatattttggt |
2306220 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 2356163 - 2356239
Alignment:
Q |
131 |
gcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatg |
207 |
Q |
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T |
2356163 |
gcaatggtttattgagttgaatttcaacattgtacttccgatgattgttgggaagcgatattttggtgctatgaatg |
2356239 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 2349447 - 2349492
Alignment:
Q |
60 |
attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcat |
105 |
Q |
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T |
2349447 |
attaaagagctcttcgatgtttggtatagcaaaaagaaagagtcat |
2349492 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 60 - 317
Target Start/End: Original strand, 41341688 - 41341946
Alignment:
Q |
60 |
attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaaca |
159 |
Q |
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||||||||| ||| ||||||||||| ||||| | ||||| ||||||||||||| | ||||||||| || || ||||| ||||||||||| ||| |||| |
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T |
41341688 |
attaaagaggtctacaatgtttggtgtagtagagagaacaagtcatcaaactatgtgttggtggacttgaaacaatgttttactcaattgagtaaaaaca |
41341787 |
T |
 |
Q |
160 |
ttgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgaggaagaagcgcaaagatgtataaaagctttacaagagttgat |
259 |
Q |
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T |
41341788 |
ttgttcttccaatgttggttgggaagcgatattttggagctacgaatgtggttgacaaggaagaagaacaaaaatgtatgaaagctttggaagagatgtt |
41341887 |
T |
 |
Q |
260 |
gcgattgttaggggtgttcacaataggagatgc-cattccttttctaaaatggtttgat |
317 |
Q |
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T |
41341888 |
acgtttgttaggggtgttcacggtgggtggtgctcttcccttttctaaaatggtttgat |
41341946 |
T |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 59 - 317
Target Start/End: Original strand, 4303542 - 4303803
Alignment:
Q |
59 |
gattaaagagctcttcaatgtttggtttagtaaa---aagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttc |
155 |
Q |
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T |
4303542 |
gattaaagagctctacaatgtttggtgtcgtaaagagaacaacgagtcatcaaaatatttgatggtggaggtcaagcaatggtttactcaattgaatata |
4303641 |
T |
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Q |
156 |
aacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgaggaagaagcgcaaagatgtataaaagctttacaagagt |
255 |
Q |
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T |
4303642 |
gacttggttcttccattgttggttggaaagcgatatttcggttctacaaatgttatcgacaaggaagaagtagaaatatgtgtaaaagctataaaagaga |
4303741 |
T |
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Q |
256 |
tgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgat |
317 |
Q |
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T |
4303742 |
tgctgcgtttgatgggggtgttcacagtgggagatgctcttccttttttaaaatggtttgat |
4303803 |
T |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 5805897 - 5805808
Alignment:
Q |
59 |
gattaaagagctcttcaatgtttggtttagtaaaaagaacgagt------catcaaactacgcgttggtggagttaaagcaatggtttac |
142 |
Q |
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T |
5805897 |
gattaaagagctcttcaatatttggtctagaaaaaagaacgaatcaaatccatcaaactatgtgttggtggacttgaagcaatggtttac |
5805808 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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