View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_high_31 (Length: 244)

Name: NF10201A_high_31
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_high_31
NF10201A_high_31
[»] chr8 (15 HSPs)
chr8 (12-72)||(6573843-6573906)
chr8 (12-71)||(22207407-22207469)
chr8 (12-71)||(18815699-18815761)
chr8 (12-71)||(18819619-18819681)
chr8 (190-244)||(6574028-6574082)
chr8 (12-72)||(36405810-36405873)
chr8 (12-71)||(17979242-17979304)
chr8 (12-71)||(36733392-36733454)
chr8 (30-72)||(38988525-38988567)
chr8 (30-72)||(39019622-39019664)
chr8 (30-71)||(21513505-21513546)
chr8 (38-71)||(22473761-22473794)
chr8 (191-244)||(5079975-5080027)
chr8 (30-58)||(4381513-4381541)
chr8 (160-188)||(6573985-6574013)
[»] scaffold0462 (2 HSPs)
scaffold0462 (12-71)||(559-621)
scaffold0462 (12-71)||(6065-6127)
[»] scaffold0051 (2 HSPs)
scaffold0051 (12-71)||(64793-64855)
scaffold0051 (190-244)||(64996-65050)
[»] chr7 (8 HSPs)
chr7 (12-71)||(15120072-15120134)
chr7 (38-72)||(48213752-48213786)
chr7 (38-71)||(15576839-15576872)
chr7 (38-71)||(16251326-16251359)
chr7 (37-66)||(20253388-20253417)
chr7 (38-71)||(24270647-24270680)
chr7 (39-71)||(4691653-4691685)
chr7 (30-58)||(14153712-14153740)
[»] chr3 (13 HSPs)
chr3 (12-71)||(17044242-17044304)
chr3 (12-71)||(53646721-53646783)
chr3 (13-72)||(15565749-15565811)
chr3 (13-71)||(24545824-24545885)
chr3 (12-72)||(17207375-17207438)
chr3 (12-71)||(1208760-1208822)
chr3 (195-244)||(53646911-53646960)
chr3 (39-71)||(22842454-22842486)
chr3 (39-71)||(45804244-45804276)
chr3 (39-71)||(50351914-50351946)
chr3 (38-71)||(12540517-12540550)
chr3 (38-71)||(14519528-14519561)
chr3 (189-244)||(12540319-12540375)
[»] chr2 (11 HSPs)
chr2 (12-71)||(25085645-25085707)
chr2 (12-69)||(21336505-21336565)
chr2 (30-71)||(21316633-21316674)
chr2 (190-244)||(45679462-45679516)
chr2 (38-71)||(1384556-1384589)
chr2 (190-234)||(25085472-25085516)
chr2 (36-71)||(37379525-37379560)
chr2 (190-244)||(45679505-45679560)
chr2 (39-69)||(25587561-25587591)
chr2 (189-244)||(22685723-22685779)
chr2 (160-188)||(25085531-25085559)
[»] chr5 (16 HSPs)
chr5 (12-71)||(8833985-8834047)
chr5 (12-69)||(26761669-26761729)
chr5 (30-71)||(20198555-20198596)
chr5 (12-71)||(1628259-1628321)
chr5 (12-71)||(14026696-14026758)
chr5 (36-72)||(16605267-16605303)
chr5 (13-71)||(660158-660219)
chr5 (30-72)||(16062617-16062659)
chr5 (38-71)||(22110953-22110986)
chr5 (12-71)||(18743774-18743836)
chr5 (35-71)||(19076444-19076480)
chr5 (190-244)||(16062435-16062490)
chr5 (190-244)||(21401940-21401995)
chr5 (38-71)||(21401798-21401831)
chr5 (160-188)||(8834136-8834164)
chr5 (12-55)||(26749243-26749289)
[»] chr1 (12 HSPs)
chr1 (12-71)||(50543827-50543889)
chr1 (30-71)||(6833442-6833483)
chr1 (30-71)||(7321697-7321738)
chr1 (12-72)||(14793249-14793312)
chr1 (13-71)||(28477534-28477595)
chr1 (38-72)||(25262989-25263023)
chr1 (190-235)||(6833209-6833254)
chr1 (38-71)||(17903843-17903876)
chr1 (30-71)||(24720603-24720644)
chr1 (38-71)||(45496202-45496235)
chr1 (41-72)||(39060318-39060349)
chr1 (38-71)||(12710093-12710126)
[»] scaffold0032 (1 HSPs)
scaffold0032 (13-71)||(62914-62975)
[»] scaffold0203 (1 HSPs)
scaffold0203 (30-71)||(19014-19055)
[»] scaffold0125 (2 HSPs)
scaffold0125 (30-71)||(27523-27564)
scaffold0125 (190-234)||(27307-27352)
[»] scaffold0004 (4 HSPs)
scaffold0004 (30-71)||(66917-66958)
scaffold0004 (190-244)||(67177-67231)
scaffold0004 (190-244)||(67220-67274)
scaffold0004 (189-244)||(67131-67188)
[»] chr4 (10 HSPs)
chr4 (30-71)||(12622611-12622652)
chr4 (13-71)||(19566745-19566806)
chr4 (39-71)||(25512708-25512740)
chr4 (39-71)||(55582410-55582442)
chr4 (36-71)||(37838746-37838781)
chr4 (36-71)||(42597475-42597510)
chr4 (30-71)||(46740311-46740352)
chr4 (36-68)||(15242295-15242327)
chr4 (190-230)||(44024489-44024529)
chr4 (12-71)||(45315099-45315160)
[»] scaffold0577 (1 HSPs)
scaffold0577 (38-72)||(7915-7949)
[»] chr6 (6 HSPs)
chr6 (30-68)||(29044429-29044467)
chr6 (38-71)||(19957753-19957786)
chr6 (35-71)||(21686555-21686591)
chr6 (12-71)||(22556371-22556433)
chr6 (38-71)||(19234550-19234583)
chr6 (30-63)||(21680707-21680740)
[»] scaffold1256 (1 HSPs)
scaffold1256 (13-69)||(193-252)
[»] scaffold0628 (2 HSPs)
scaffold0628 (38-71)||(4368-4401)
scaffold0628 (38-71)||(8928-8961)
[»] scaffold0505 (2 HSPs)
scaffold0505 (38-71)||(1878-1911)
scaffold0505 (38-71)||(3898-3931)
[»] scaffold0108 (1 HSPs)
scaffold0108 (38-71)||(7728-7761)
[»] scaffold0123 (1 HSPs)
scaffold0123 (12-69)||(16178-16239)
[»] scaffold0230 (4 HSPs)
scaffold0230 (38-69)||(7610-7641)
scaffold0230 (192-244)||(7807-7860)
scaffold0230 (190-235)||(7937-7982)
scaffold0230 (189-244)||(7892-7948)
[»] scaffold0174 (1 HSPs)
scaffold0174 (190-244)||(15055-15110)
[»] scaffold0371 (2 HSPs)
scaffold0371 (33-71)||(11132-11170)
scaffold0371 (160-188)||(11250-11278)
[»] scaffold0231 (1 HSPs)
scaffold0231 (41-71)||(18590-18620)
[»] scaffold0213 (1 HSPs)
scaffold0213 (30-63)||(18296-18329)
[»] scaffold0059 (1 HSPs)
scaffold0059 (38-71)||(49209-49242)
[»] scaffold0056 (3 HSPs)
scaffold0056 (190-235)||(15379-15424)
scaffold0056 (190-234)||(15643-15688)
scaffold0056 (30-71)||(15819-15860)
[»] scaffold0401 (1 HSPs)
scaffold0401 (190-230)||(7906-7946)
[»] scaffold0063 (1 HSPs)
scaffold0063 (12-63)||(61966-62020)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 6573843 - 6573906
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgtc 72  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  6573843 gaatatgatgttacgtgatgttgttcataattgatgaattatgatattatgatgcaaagtcgtc 6573906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 22207469 - 22207407
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  22207469 gaatgtgatgttacgtgatgttgttcataattgatgaattatgatattatgatgcaaagtcgt 22207407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 18815699 - 18815761
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||   | ||||||||||||||||||||||||||||||||||||    
T  18815699 gaatatgatgttacatgatgttgttcgtaattgatgaattatgatattatgatgcaaagtcgt 18815761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 18819619 - 18819681
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||   ||||| ||||||||||||||||||||||||||||||||    
T  18819619 gaatatgatgttacatgatgttgttcataactgatgaattatgatattatgatgcaaagtcgt 18819681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 6574028 - 6574082
Alignment:
Q  190 tggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataa 244  Q
    ||||||||||||||||||||||||||  ||||  |||||||||||||||||||||    
T  6574028 tggaatgtataatcattcatttaaagttgaggacttgatgctctgaaatttataa 6574082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 36405810 - 36405873
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgtc 72  Q
    |||||||||||||| |||||||   ||||||| |||||||||||||||||||||| ||||||||    
T  36405810 gaatatgatgttacatgatgttgttcataattaatgaattatgatattatgatgcgaagtcgtc 36405873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 17979242 - 17979304
Alignment:
Q  12 gaatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||    ||||||||||||||||||||||||||||| |||||||    
T  17979242 gaatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcgaagtcgt 17979304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 36733392 - 36733454
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||   |||||| |||||||||||||||||||||||||| ||||    
T  36733392 gaatatgatgttacatgatgttgttcataatagatgaattatgatattatgatgcaaattcgt 36733454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 38988567 - 38988525
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgtc 72  Q
    |||| ||||||||||||||||||||||||||||| ||||||||    
T  38988567 tgtttataattgatgaattatgatattatgatgcgaagtcgtc 38988525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 39019664 - 39019622
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgtc 72  Q
    |||| ||||||||||||||||||||||||||||| ||||||||    
T  39019664 tgtttataattgatgaattatgatattatgatgcgaagtcgtc 39019622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 21513546 - 21513505
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  21513546 tgtttataattgatgaattatgatattatgatgcgaagtcgt 21513505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 22473794 - 22473761
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  22473794 attgatgaattatgatattatgatgcaaagtcgt 22473761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 5080027 - 5079975
Alignment:
Q  191 ggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataa 244  Q
    |||||||| ||||||||||| |||| |||||| ||||||||||||||| |||||    
T  5080027 ggaatgtaaaatcattcatt-aaagtagagggcttgatgctctgaaatgtataa 5079975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 4381513 - 4381541
Alignment:
Q  30 tgttcataattgatgaattatgatattat 58  Q
    |||||||||||||||||||||||||||||    
T  4381513 tgttcataattgatgaattatgatattat 4381541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 6573985 - 6574013
Alignment:
Q  160 ctgagtccatgcatactcatattaagttg 188  Q
    |||||||||||||||||||||||||||||    
T  6573985 ctgagtccatgcatactcatattaagttg 6574013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 621 - 559
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||    
T  621 gaatatgatgttacgtgatgttgttcataattgatgaattataatattatgatgcaaagtcgt 559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 6127 - 6065
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||    
T  6127 gaatatgatgttacgtgatgttgttcataattgatgaattataatattatgatgcaaagtcgt 6065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 64793 - 64855
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||    
T  64793 gaatatgatgttacgtgatgttgttcattattgatgaattatgatattatgatgcaaagtcgt 64855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 64996 - 65050
Alignment:
Q  190 tggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataa 244  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||| |||||    
T  64996 tggaatgtataatcattcatttaaagttgagggtttgatgctctggaatgtataa 65050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 15120072 - 15120134
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||    
T  15120072 gaatatgatgttacgtgatgttgttcataattgatgaattatgatattatgatgcaaattcgt 15120134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 48213752 - 48213786
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgtc 72  Q
    |||||||||||||||||||||||||||||||||||    
T  48213752 attgatgaattatgatattatgatgcaaagtcgtc 48213786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 15576839 - 15576872
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  15576839 attgatgaattatgatattatgatgcaaagtcgt 15576872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 16251326 - 16251359
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||| ||||||||||||||||||||    
T  16251326 attgatgaattattatattatgatgcaaagtcgt 16251359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 20253388 - 20253417
Alignment:
Q  37 aattgatgaattatgatattatgatgcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  20253388 aattgatgaattatgatattatgatgcaaa 20253417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 24270647 - 24270680
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||| |||||||    
T  24270647 attgatgaattatgatattatgatgcgaagtcgt 24270680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 4691653 - 4691685
Alignment:
Q  39 ttgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||| |||||||    
T  4691653 ttgatgaattatgatattatgatgcgaagtcgt 4691685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 14153712 - 14153740
Alignment:
Q  30 tgttcataattgatgaattatgatattat 58  Q
    |||||||||||||||||||||||||||||    
T  14153712 tgttcataattgatgaattatgatattat 14153740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 17044304 - 17044242
Alignment:
Q  12 gaatatgatgttacgtga---tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||    
T  17044304 gaatatgatgttacgtgaggttgttcataattgatgaattatgatattatgatgcaaaatcgt 17044242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 53646721 - 53646783
Alignment:
Q  12 gaatatgatgttacgtgat---gttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||   |||||||||||||||||||| ||||||||||||||||||||    
T  53646721 gaatatgatgttacgtgatattgttcataattgatgaattataatattatgatgcaaagtcgt 53646783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 15565811 - 15565749
Alignment:
Q  13 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgtc 72  Q
    ||||||||||||| |||||||    ||||||||||||||||||||||||||||||||||||||    
T  15565811 aatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcaaagtcgtc 15565749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 24545885 - 24545824
Alignment:
Q  13 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||| |||||||    |||||||||||||||||||||||||||||||||||||    
T  24545885 aatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcaaagtcgt 24545824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 17207438 - 17207375
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgtc 72  Q
    |||||||||||||| |||||||   |||||||||||||||||||| ||||||||| ||||||||    
T  17207438 gaatatgatgttacatgatgttgttcataattgatgaattatgatcttatgatgcgaagtcgtc 17207375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 1208760 - 1208822
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||   |||||||||||||||||||||||||||||  |||||||    
T  1208760 gaatatgatgttacatgatgttgttcataattgatgaattatgatattatgatgtgaagtcgt 1208822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 53646911 - 53646960
Alignment:
Q  195 tgtataatcattcatttaaagcagagggtttgatgctctgaaatttataa 244  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||| |||||    
T  53646911 tgtataatcattcatttaaagctgagggcttgatgctctggaatgtataa 53646960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 22842454 - 22842486
Alignment:
Q  39 ttgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||||||||||    
T  22842454 ttgatgaattatgatattatgatgcaaagtcgt 22842486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 45804244 - 45804276
Alignment:
Q  39 ttgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||||||||||    
T  45804244 ttgatgaattatgatattatgatgcaaagtcgt 45804276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 50351914 - 50351946
Alignment:
Q  39 ttgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||||||||||    
T  50351914 ttgatgaattatgatattatgatgcaaagtcgt 50351946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 12540550 - 12540517
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||| |||||||||||||||||||||||||||    
T  12540550 attgattaattatgatattatgatgcaaagtcgt 12540517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 14519561 - 14519528
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||| |||||||||||||||||||||||||||    
T  14519561 attgataaattatgatattatgatgcaaagtcgt 14519528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 12540375 - 12540319
Alignment:
Q  189 ttggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataa 244  Q
    ||||||||||||||||||||| ||||||  ||||| ||||||||||| ||| |||||    
T  12540375 ttggaatgtataatcattcatgttaaagttgagggcttgatgctctggaatgtataa 12540319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 25085707 - 25085645
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||    
T  25085707 gaatatgatgttacgtgatgttgttcataattgatgaattatgatattatgatgcaaattcgt 25085645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 21336505 - 21336565
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtc 69  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||    
T  21336505 gaatatgatgttacatgatgttgttcataattgatgaattatgatattatgatgcaaagtc 21336565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 21316633 - 21316674
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  21316633 tgttcataattgattaattatgatattatgatgcaaagtcgt 21316674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 45679516 - 45679462
Alignment:
Q  190 tggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataa 244  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||| ||| |||||    
T  45679516 tggaatgtataatcattcatttaaagttgagggcttgatgctctggaatgtataa 45679462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 1384556 - 1384589
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  1384556 attgatgaattatgatattatgatgcaaagtcgt 1384589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 25085516 - 25085472
Alignment:
Q  190 tggaatgtataatcattcatttaaagcagagggtttgatgctctg 234  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||    
T  25085516 tggaatgtataatcattcatttaaagttgagggcttgatgctctg 25085472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 37379560 - 37379525
Alignment:
Q  36 taattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||| ||||||||||||||||||||||||||||||    
T  37379560 taattaatgaattatgatattatgatgcaaagtcgt 37379525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 45679560 - 45679505
Alignment:
Q  190 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataa 244  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||| ||| |||||    
T  45679560 tggaatgtataatcattcatattaaagtagagggcttgatgctctggaatgtataa 45679505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 69
Target Start/End: Original strand, 25587561 - 25587591
Alignment:
Q  39 ttgatgaattatgatattatgatgcaaagtc 69  Q
    |||||||||||||||||||||||||||||||    
T  25587561 ttgatgaattatgatattatgatgcaaagtc 25587591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 22685779 - 22685723
Alignment:
Q  189 ttggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataa 244  Q
    ||||||||||||||||||||| ||||||  ||||| ||||||||||| ||| |||||    
T  22685779 ttggaatgtataatcattcatattaaagttgagggcttgatgctctggaatatataa 22685723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 25085559 - 25085531
Alignment:
Q  160 ctgagtccatgcatactcatattaagttg 188  Q
    |||||||||||||||||||||||||||||    
T  25085559 ctgagtccatgcatactcatattaagttg 25085531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 8833985 - 8834047
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||   |||||||||||||||||||||||||| |||||||||||    
T  8833985 gaatatgatgttacatgatgttgttcataattgatgaattatgatattatgctgcaaagtcgt 8834047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 26761729 - 26761669
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtc 69  Q
    ||||||||||||||||||||||   ||||||| ||||||||| ||||||||||||||||||    
T  26761729 gaatatgatgttacgtgatgttgttcataattaatgaattatcatattatgatgcaaagtc 26761669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 20198555 - 20198596
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  20198555 tgttcataattgatgaattatgatattatgatgcgaagtcgt 20198596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 1628259 - 1628321
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||||| |||| |||||||    
T  1628259 gaatatgatgttacatgatgttgttcataattgatgaattatgatattataatgcgaagtcgt 1628321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 14026696 - 14026758
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||||||| || |||||||    
T  14026696 gaatatgatgttacatgatgttgttcataattgatgaattatgatattatgaagcgaagtcgt 14026758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 16605267 - 16605303
Alignment:
Q  36 taattgatgaattatgatattatgatgcaaagtcgtc 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  16605267 taattgatgaattatgatattatgatgcaaagtcgtc 16605303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 660219 - 660158
Alignment:
Q  13 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||| |||||||    ||||||||||||||||| |||||||||||||||||||    
T  660219 aatatgatgttacatgatgttgtttataattgatgaattatggtattatgatgcaaagtcgt 660158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 16062659 - 16062617
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgtc 72  Q
    ||||||| ||||||||||||| |||||||||||||||||||||    
T  16062659 tgttcatgattgatgaattataatattatgatgcaaagtcgtc 16062617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 22110986 - 22110953
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  22110986 attgatgaattatgatattatgatgcaaagtcgt 22110953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 18743836 - 18743774
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||   |||||||||| ||||||||||||||||||  |||||||    
T  18743836 gaatatgatgttacatgatgttgttcataattgataaattatgatattatgatgtgaagtcgt 18743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 19076480 - 19076444
Alignment:
Q  35 ataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||| ||||||||||||||||||||||||||||||    
T  19076480 ataattaatgaattatgatattatgatgcaaagtcgt 19076444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 16062490 - 16062435
Alignment:
Q  190 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataa 244  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||| ||| |||||    
T  16062490 tggaatgtataatcattcatattaaagtagagggcttgatgctctggaatgtataa 16062435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 21401940 - 21401995
Alignment:
Q  190 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataa 244  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||| ||| |||||    
T  21401940 tggaatgtataatcattcatattaaagtagagggcttgatgctctggaatgtataa 21401995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 21401798 - 21401831
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||| |||||||||||||||||||||    
T  21401798 attgatgaattacgatattatgatgcaaagtcgt 21401831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 8834136 - 8834164
Alignment:
Q  160 ctgagtccatgcatactcatattaagttg 188  Q
    |||||||||||||||||||||||||||||    
T  8834136 ctgagtccatgcatactcatattaagttg 8834164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 26749289 - 26749243
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatat 55  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||    
T  26749289 gaatatgatgttacatgatgttgttcataattgatgaattatgatat 26749243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 50543889 - 50543827
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||   |||||||||||||||||||||||||||||| |||||||    
T  50543889 gaatatgatgttacatgatgttgttcataattgatgaattatgatattatgatgcgaagtcgt 50543827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 6833483 - 6833442
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  6833483 tgttcatgattgatgaattatgatattatgatgcaaagtcgt 6833442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 7321697 - 7321738
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  7321697 tgttcataattgatgaattatgatattatgatgcgaagtcgt 7321738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 14793249 - 14793312
Alignment:
Q  12 gaatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgtc 72  Q
    |||||||||||||| |||||||    ||||||||||||||||||||||||||||| ||||||||    
T  14793249 gaatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcgaagtcgtc 14793312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 28477534 - 28477595
Alignment:
Q  13 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||| |||||||    ||||||||||||||||||||| |||||||||||||||    
T  28477534 aatatgatgttacatgatgttgtttataattgatgaattatgatatcatgatgcaaagtcgt 28477595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 25262989 - 25263023
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgtc 72  Q
    |||||||||||||||||||||||||||||||||||    
T  25262989 attgatgaattatgatattatgatgcaaagtcgtc 25263023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 6833254 - 6833209
Alignment:
Q  190 tggaatgtataatcattcatttaaagcagagggtttgatgctctga 235  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||    
T  6833254 tggaatgtataatcattcatttaaagttgagggcttgatgctctga 6833209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 17903843 - 17903876
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  17903843 attgatgaattatgatattatgatgcaaagtcgt 17903876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 24720603 - 24720644
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  24720603 tgtttataattgatgaattatgatattatgatgcgaagtcgt 24720644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 45496235 - 45496202
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  45496235 attgatgaattatgatattatgatgcaaagtcgt 45496202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 72
Target Start/End: Complemental strand, 39060349 - 39060318
Alignment:
Q  41 gatgaattatgatattatgatgcaaagtcgtc 72  Q
    ||||||||||||||||||||||||||||||||    
T  39060349 gatgaattatgatattatgatgcaaagtcgtc 39060318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 12710126 - 12710093
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||| |||||||||||||||||||||    
T  12710126 attgatgaattacgatattatgatgcaaagtcgt 12710093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 62914 - 62975
Alignment:
Q  13 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||| |||||||    |||||||||||||||||||||||||||||||||||||    
T  62914 aatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcaaagtcgt 62975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 19014 - 19055
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  19014 tgtttataattgatgaattatgatattatgatgcaaagtcgt 19055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 27564 - 27523
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  27564 tgttcataattgatgaattatgatattatgattcaaagtcgt 27523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 27352 - 27307
Alignment:
Q  190 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctg 234  Q
    |||||||||||||||||||| |||||| |||||| |||||||||||    
T  27352 tggaatgtataatcattcatattaaagtagagggcttgatgctctg 27307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 66917 - 66958
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  66917 tgttcataattgatgaattatgatattatgatgcgaagtcgt 66958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 67177 - 67231
Alignment:
Q  190 tggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataa 244  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||| ||| |||||    
T  67177 tggaatgtataatcattcatataaagtagagggattgatgctctggaatgtataa 67231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 67220 - 67274
Alignment:
Q  190 tggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataa 244  Q
    ||||||||||||||||||||||||||  || || ||||||||||||||| |||||    
T  67220 tggaatgtataatcattcatttaaagttgatggcttgatgctctgaaatgtataa 67274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 67131 - 67188
Alignment:
Q  189 ttggaatgtataatcattc--atttaaagcagagggtttgatgctctgaaatttataa 244  Q
    |||||||||||||||||||  |||||||| |||||| ||||||||||| ||| |||||    
T  67131 ttggaatgtataatcattcatatttaaagtagagggcttgatgctctggaatgtataa 67188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 12622652 - 12622611
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  12622652 tgttcataattgatgaattatgatattatgatgcgaagtcgt 12622611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 19566745 - 19566806
Alignment:
Q  13 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||| |||||||    ||||||||||||||||||||||||||||| |||||||    
T  19566745 aatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcgaagtcgt 19566806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 25512740 - 25512708
Alignment:
Q  39 ttgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||||||||||    
T  25512740 ttgatgaattatgatattatgatgcaaagtcgt 25512708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 55582442 - 55582410
Alignment:
Q  39 ttgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||||||||||    
T  55582442 ttgatgaattatgatattatgatgcaaagtcgt 55582410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 37838746 - 37838781
Alignment:
Q  36 taattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||| ||||||||||||||||||||||||||||||    
T  37838746 taattaatgaattatgatattatgatgcaaagtcgt 37838781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 42597475 - 42597510
Alignment:
Q  36 taattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||| ||||||||||||||||||||||||||||||    
T  42597475 taattaatgaattatgatattatgatgcaaagtcgt 42597510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 46740352 - 46740311
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||| ||||||||||||||||||||| ||||||| |||||||    
T  46740352 tgtttataattgatgaattatgatatcatgatgcgaagtcgt 46740311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 15242295 - 15242327
Alignment:
Q  36 taattgatgaattatgatattatgatgcaaagt 68  Q
    ||||| |||||||||||||||||||||||||||    
T  15242295 taattaatgaattatgatattatgatgcaaagt 15242327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 44024489 - 44024529
Alignment:
Q  190 tggaatgtataatcattcatttaaagcagagggtttgatgc 230  Q
    ||||||||||||||||||||||||||  | |||||||||||    
T  44024489 tggaatgtataatcattcatttaaagttgggggtttgatgc 44024529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 45315099 - 45315160
Alignment:
Q  12 gaatatgatgttacgtga---tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||   ||||||||||||||| |||||||||||||||||  |||||||    
T  45315099 gaatatgatgttacatgatgttgttcataattgatg-attatgatattatgatgtgaagtcgt 45315160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 7949 - 7915
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgtc 72  Q
    |||||||||||||||||||||||||||||||||||    
T  7949 attgatgaattatgatattatgatgcaaagtcgtc 7915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 29044467 - 29044429
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagt 68  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  29044467 tgttcatgattgatgaattatgatattatgatgcaaagt 29044429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 19957753 - 19957786
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  19957753 attgatgaattatgatattatgatgcaaagtcgt 19957786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 21686555 - 21686591
Alignment:
Q  35 ataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||| |||||||    
T  21686555 ataattgatgaattatgatattatgatgcgaagtcgt 21686591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 22556433 - 22556371
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||| |||||||   ||||||||||||||||| ||| |||||||| |||||||    
T  22556433 gaatatgatgttacatgatgttgttcataattgatgaattataatactatgatgcgaagtcgt 22556371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 19234583 - 19234550
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||| |||||||||||||||||||||    
T  19234583 attgatgaattacgatattatgatgcaaagtcgt 19234550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 21680707 - 21680740
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgc 63  Q
    |||| |||||||||||||||||||||||||||||    
T  21680707 tgtttataattgatgaattatgatattatgatgc 21680740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 193 - 252
Alignment:
Q  13 aatatgatgttacgtgatg---ttcataattgatgaattatgatattatgatgcaaagtc 69  Q
    ||||||||||||| |||||   || ||||||||| |||||||||||||||||||||||||    
T  193 aatatgatgttacatgatggtgtttataattgattaattatgatattatgatgcaaagtc 252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 4368 - 4401
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  4368 attgatgaattatgatattatgatgcaaagtcgt 4401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 8928 - 8961
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  8928 attgatgaattatgatattatgatgcaaagtcgt 8961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 1911 - 1878
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  1911 attgatgaattatgatattatgatgcaaagtcgt 1878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 3931 - 3898
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  3931 attgatgaattatgatattatgatgcaaagtcgt 3898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 7728 - 7761
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  7728 attgatgaattatgatattatgatgcaaagtcgt 7761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 16239 - 16178
Alignment:
Q  12 gaatatgatgttacgtgatgtt----cataattgatgaattatgatattatgatgcaaagtc 69  Q
    |||||||||||||| |||||||    ||||||||||||||||||||||||| |||| |||||    
T  16239 gaatatgatgttacatgatgttgattcataattgatgaattatgatattataatgcgaagtc 16178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 69
Target Start/End: Original strand, 7610 - 7641
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtc 69  Q
    ||||||||||||||||||||||||||||||||    
T  7610 attgatgaattatgatattatgatgcaaagtc 7641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 7807 - 7860
Alignment:
Q  192 gaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataa 244  Q
    |||||||||||||||||| |||||| |||||| ||||||||||| ||| |||||    
T  7807 gaatgtataatcattcatattaaagtagagggcttgatgctctggaatatataa 7860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 7937 - 7982
Alignment:
Q  190 tggaatgtataatcattcatttaaagcagagggtttgatgctctga 235  Q
    |||||||||||||||||||||| |||  ||||| ||||||||||||    
T  7937 tggaatgtataatcattcatttcaagttgagggattgatgctctga 7982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 7892 - 7948
Alignment:
Q  189 ttggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataa 244  Q
    |||||||| |||||||||||| |||||| |||||| ||||||||||| ||| |||||    
T  7892 ttggaatgaataatcattcatattaaagtagagggcttgatgctctggaatgtataa 7948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 15110 - 15055
Alignment:
Q  190 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataa 244  Q
    |||||||||||||||||||| ||||||  ||||||||||||||||| ||| |||||    
T  15110 tggaatgtataatcattcatattaaagttgagggtttgatgctctggaatgtataa 15055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 11132 - 11170
Alignment:
Q  33 tcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  11132 tcatgattgatgaattattatattatgatgcaaagtcgt 11170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 11250 - 11278
Alignment:
Q  160 ctgagtccatgcatactcatattaagttg 188  Q
    |||||||||||||||||||||||||||||    
T  11250 ctgagtccatgcatactcatattaagttg 11278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 18590 - 18620
Alignment:
Q  41 gatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||||||||    
T  18590 gatgaattatgatattatgatgcaaagtcgt 18620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 18329 - 18296
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgc 63  Q
    |||| |||||||||||||||||||||||||||||    
T  18329 tgtttataattgatgaattatgatattatgatgc 18296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 49242 - 49209
Alignment:
Q  38 attgatgaattatgatattatgatgcaaagtcgt 71  Q
    |||||||||||||||||||||||||| |||||||    
T  49242 attgatgaattatgatattatgatgcgaagtcgt 49209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 15424 - 15379
Alignment:
Q  190 tggaatgtataatcattcatttaaagcagagggtttgatgctctga 235  Q
    |||||||||||||||||||| |||||  ||||| ||||||||||||    
T  15424 tggaatgtataatcattcatataaagttgagggcttgatgctctga 15379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 15688 - 15643
Alignment:
Q  190 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctg 234  Q
    |||||||||||||||||||| |||||| |||||| |||||||||||    
T  15688 tggaatgtataatcattcatattaaagtagagggcttgatgctctg 15643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 15860 - 15819
Alignment:
Q  30 tgttcataattgatgaattatgatattatgatgcaaagtcgt 71  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||    
T  15860 tgttcatgattgatgaattatcatattatgatgcaaattcgt 15819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 7946 - 7906
Alignment:
Q  190 tggaatgtataatcattcatttaaagcagagggtttgatgc 230  Q
    ||||||||||||||||||||||||||  | |||||||||||    
T  7946 tggaatgtataatcattcatttaaagttgggggtttgatgc 7906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 62020 - 61966
Alignment:
Q  12 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgc 63  Q
    |||||||||||||| |||||||   ||||||| ||||||||||||||||| ||||    
T  62020 gaatatgatgttacatgatgttgttcataattaatgaattatgatattataatgc 61966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University