View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_high_36 (Length: 215)

Name: NF10201A_high_36
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_high_36
NF10201A_high_36
[»] chr2 (1 HSPs)
chr2 (17-192)||(45096786-45096961)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 45096786 - 45096961
Alignment:
Q  17 gagatgaagcaagacccaaaatacattgataagctaaaaaggtacaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45096786 gagatgaagcaagacccaaaatacattgataagctaaaaaggtacaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgta 45096885  T
Q  117 aattgcaaaacctaatctatttctaatataatcgtctctaatttggttaggcaactgagaccaccaagcataagaa 192  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  45096886 aattgtaaaacctaatctatttctaatatagtcgtctctaatttggttaggcaactgaaaccaccaagcataagaa 45096961  T

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